Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25180 and RR42_RS25185 are separated by 226 nucleotides RR42_RS25185 and RR42_RS25190 are separated by 171 nucleotides
RR42_RS25180: RR42_RS25180 - AraC family transcriptional regulator, at 989,279 to 990,148
_RS25180
RR42_RS25185: RR42_RS25185 - epimerase, at 990,375 to 991,253
_RS25185
RR42_RS25190: RR42_RS25190 - acyl-CoA dehydrogenase, at 991,425 to 993,194
_RS25190
Position (kb) 990
991
992 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 989.568 kb on + strand, within RR42_RS25180 at 989.586 kb on - strand, within RR42_RS25180 at 989.694 kb on + strand, within RR42_RS25180 at 989.727 kb on - strand, within RR42_RS25180 at 989.727 kb on - strand, within RR42_RS25180 at 989.856 kb on - strand, within RR42_RS25180 at 989.856 kb on - strand, within RR42_RS25180 at 989.981 kb on + strand, within RR42_RS25180 at 990.173 kb on + strand at 990.174 kb on - strand at 990.245 kb on + strand at 990.306 kb on - strand at 990.340 kb on + strand at 990.388 kb on - strand at 990.584 kb on - strand, within RR42_RS25185 at 990.587 kb on + strand, within RR42_RS25185 at 990.665 kb on - strand, within RR42_RS25185 at 990.665 kb on - strand, within RR42_RS25185 at 990.665 kb on - strand, within RR42_RS25185 at 990.715 kb on - strand, within RR42_RS25185 at 990.845 kb on + strand, within RR42_RS25185 at 990.845 kb on + strand, within RR42_RS25185 at 990.846 kb on - strand, within RR42_RS25185 at 991.184 kb on + strand at 991.239 kb on - strand at 991.260 kb on + strand at 991.261 kb on - strand at 991.273 kb on + strand at 991.273 kb on + strand at 991.273 kb on + strand at 991.274 kb on - strand at 991.274 kb on - strand at 991.359 kb on + strand at 991.360 kb on - strand at 991.489 kb on - strand at 991.489 kb on - strand at 991.513 kb on + strand at 991.513 kb on + strand at 991.543 kb on + strand at 991.544 kb on - strand at 991.544 kb on - strand at 991.544 kb on - strand at 991.609 kb on - strand, within RR42_RS25190 at 991.609 kb on - strand, within RR42_RS25190 at 991.636 kb on + strand, within RR42_RS25190 at 991.636 kb on + strand, within RR42_RS25190 at 991.636 kb on + strand, within RR42_RS25190 at 991.637 kb on - strand, within RR42_RS25190 at 991.637 kb on - strand, within RR42_RS25190 at 991.689 kb on + strand, within RR42_RS25190 at 991.689 kb on + strand, within RR42_RS25190 at 991.689 kb on + strand, within RR42_RS25190 at 991.899 kb on - strand, within RR42_RS25190 at 991.932 kb on - strand, within RR42_RS25190 at 991.941 kb on - strand, within RR42_RS25190 at 991.941 kb on - strand, within RR42_RS25190 at 991.942 kb on + strand, within RR42_RS25190 at 991.943 kb on - strand, within RR42_RS25190 at 991.943 kb on - strand, within RR42_RS25190 at 991.943 kb on - strand, within RR42_RS25190 at 991.943 kb on - strand, within RR42_RS25190 at 992.012 kb on + strand, within RR42_RS25190 at 992.137 kb on + strand, within RR42_RS25190 at 992.137 kb on + strand, within RR42_RS25190 at 992.137 kb on + strand, within RR42_RS25190 at 992.137 kb on + strand, within RR42_RS25190 at 992.138 kb on - strand, within RR42_RS25190 at 992.138 kb on - strand, within RR42_RS25190 at 992.159 kb on + strand, within RR42_RS25190
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 989,568 + RR42_RS25180 0.33 -0.2 989,586 - RR42_RS25180 0.35 +0.1 989,694 + RR42_RS25180 0.48 +1.2 989,727 - RR42_RS25180 0.51 +0.6 989,727 - RR42_RS25180 0.51 +0.2 989,856 - RR42_RS25180 0.66 +1.9 989,856 - RR42_RS25180 0.66 +2.3 989,981 + RR42_RS25180 0.81 -2.3 990,173 + +2.3 990,174 - +0.8 990,245 + -2.7 990,306 - +0.8 990,340 + -3.1 990,388 - +1.0 990,584 - RR42_RS25185 0.24 -0.2 990,587 + RR42_RS25185 0.24 -1.3 990,665 - RR42_RS25185 0.33 -0.2 990,665 - RR42_RS25185 0.33 +0.7 990,665 - RR42_RS25185 0.33 +0.6 990,715 - RR42_RS25185 0.39 -3.3 990,845 + RR42_RS25185 0.53 -1.4 990,845 + RR42_RS25185 0.53 -3.0 990,846 - RR42_RS25185 0.54 +0.5 991,184 + +1.3 991,239 - -3.0 991,260 + +0.9 991,261 - -3.3 991,273 + +1.5 991,273 + +0.3 991,273 + -0.3 991,274 - -0.4 991,274 - +0.6 991,359 + -0.5 991,360 - +1.2 991,489 - +0.7 991,489 - -2.7 991,513 + +0.5 991,513 + +1.3 991,543 + -3.4 991,544 - -2.1 991,544 - +0.6 991,544 - +1.9 991,609 - RR42_RS25190 0.10 -2.9 991,609 - RR42_RS25190 0.10 +0.4 991,636 + RR42_RS25190 0.12 -0.7 991,636 + RR42_RS25190 0.12 +0.6 991,636 + RR42_RS25190 0.12 -4.0 991,637 - RR42_RS25190 0.12 +0.9 991,637 - RR42_RS25190 0.12 -0.9 991,689 + RR42_RS25190 0.15 +1.3 991,689 + RR42_RS25190 0.15 +0.7 991,689 + RR42_RS25190 0.15 -1.6 991,899 - RR42_RS25190 0.27 -1.1 991,932 - RR42_RS25190 0.29 +1.1 991,941 - RR42_RS25190 0.29 +2.0 991,941 - RR42_RS25190 0.29 +1.8 991,942 + RR42_RS25190 0.29 +0.1 991,943 - RR42_RS25190 0.29 +0.2 991,943 - RR42_RS25190 0.29 -2.6 991,943 - RR42_RS25190 0.29 -0.2 991,943 - RR42_RS25190 0.29 -0.9 992,012 + RR42_RS25190 0.33 -2.9 992,137 + RR42_RS25190 0.40 -1.4 992,137 + RR42_RS25190 0.40 -0.2 992,137 + RR42_RS25190 0.40 -0.3 992,137 + RR42_RS25190 0.40 +1.3 992,138 - RR42_RS25190 0.40 -0.4 992,138 - RR42_RS25190 0.40 +0.1 992,159 + RR42_RS25190 0.41 +0.8
Or see this region's nucleotide sequence