Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24920 and RR42_RS24925 are separated by 2 nucleotides RR42_RS24925 and RR42_RS24930 are separated by 105 nucleotides RR42_RS24930 and RR42_RS24935 are separated by 170 nucleotides
RR42_RS24920: RR42_RS24920 - MFS transporter, at 928,201 to 929,736
_RS24920
RR42_RS24925: RR42_RS24925 - LysR family transcriptional regulator, at 929,739 to 930,644
_RS24925
RR42_RS24930: RR42_RS24930 - AraC family transcriptional regulator, at 930,750 to 931,346
_RS24930
RR42_RS24935: RR42_RS24935 - formyl-CoA transferase, at 931,517 to 932,701
_RS24935
Position (kb) 929
930
931 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 928.818 kb on + strand, within RR42_RS24920 at 928.819 kb on + strand, within RR42_RS24920 at 928.819 kb on + strand, within RR42_RS24920 at 928.819 kb on + strand, within RR42_RS24920 at 928.819 kb on + strand, within RR42_RS24920 at 928.856 kb on + strand, within RR42_RS24920 at 929.032 kb on + strand, within RR42_RS24920 at 929.032 kb on + strand, within RR42_RS24920 at 929.032 kb on + strand, within RR42_RS24920 at 929.033 kb on - strand, within RR42_RS24920 at 929.033 kb on - strand, within RR42_RS24920 at 929.033 kb on - strand, within RR42_RS24920 at 929.036 kb on + strand, within RR42_RS24920 at 929.037 kb on - strand, within RR42_RS24920 at 929.045 kb on - strand, within RR42_RS24920 at 929.047 kb on + strand, within RR42_RS24920 at 929.068 kb on + strand, within RR42_RS24920 at 929.174 kb on - strand, within RR42_RS24920 at 929.431 kb on + strand, within RR42_RS24920 at 929.625 kb on + strand at 929.671 kb on + strand at 929.959 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.166 kb on + strand, within RR42_RS24925 at 930.167 kb on - strand, within RR42_RS24925 at 930.177 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.388 kb on + strand, within RR42_RS24925 at 930.389 kb on - strand, within RR42_RS24925 at 930.501 kb on + strand, within RR42_RS24925 at 930.502 kb on - strand, within RR42_RS24925 at 930.564 kb on + strand at 930.564 kb on + strand at 930.564 kb on + strand at 930.564 kb on + strand at 930.565 kb on - strand at 930.688 kb on + strand at 930.689 kb on - strand at 930.718 kb on - strand at 931.016 kb on + strand, within RR42_RS24930 at 931.509 kb on + strand at 931.516 kb on + strand at 931.517 kb on - strand at 931.537 kb on + strand at 931.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 928,818 + RR42_RS24920 0.40 +2.2 928,819 + RR42_RS24920 0.40 +0.1 928,819 + RR42_RS24920 0.40 +0.1 928,819 + RR42_RS24920 0.40 -0.1 928,819 + RR42_RS24920 0.40 -0.9 928,856 + RR42_RS24920 0.43 +1.6 929,032 + RR42_RS24920 0.54 +1.6 929,032 + RR42_RS24920 0.54 -0.5 929,032 + RR42_RS24920 0.54 -3.3 929,033 - RR42_RS24920 0.54 -1.5 929,033 - RR42_RS24920 0.54 -0.2 929,033 - RR42_RS24920 0.54 +0.1 929,036 + RR42_RS24920 0.54 -0.2 929,037 - RR42_RS24920 0.54 +0.2 929,045 - RR42_RS24920 0.55 +1.4 929,047 + RR42_RS24920 0.55 +0.0 929,068 + RR42_RS24920 0.56 -1.9 929,174 - RR42_RS24920 0.63 -1.2 929,431 + RR42_RS24920 0.80 +1.9 929,625 + -0.1 929,671 + -3.7 929,959 - RR42_RS24925 0.24 -1.5 930,146 - RR42_RS24925 0.45 -4.5 930,146 - RR42_RS24925 0.45 +1.9 930,146 - RR42_RS24925 0.45 -3.9 930,166 + RR42_RS24925 0.47 +0.9 930,167 - RR42_RS24925 0.47 -0.4 930,177 + RR42_RS24925 0.48 -4.0 930,264 + RR42_RS24925 0.58 -2.8 930,264 + RR42_RS24925 0.58 +0.7 930,264 + RR42_RS24925 0.58 +0.4 930,388 + RR42_RS24925 0.72 +0.3 930,389 - RR42_RS24925 0.72 +1.4 930,501 + RR42_RS24925 0.84 -2.3 930,502 - RR42_RS24925 0.84 -0.9 930,564 + -0.2 930,564 + +0.9 930,564 + +0.7 930,564 + -4.1 930,565 - -1.0 930,688 + -1.2 930,689 - -3.4 930,718 - +0.5 931,016 + RR42_RS24930 0.45 -0.7 931,509 + +1.2 931,516 + -2.7 931,517 - +0.9 931,537 + +2.0 931,621 + +0.6
Or see this region's nucleotide sequence