Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24905 and RR42_RS24910 are separated by 101 nucleotides RR42_RS24910 and RR42_RS24915 are separated by 344 nucleotides RR42_RS24915 and RR42_RS24920 are separated by 99 nucleotides
RR42_RS24905: RR42_RS24905 - alpha/beta hydrolase, at 925,611 to 926,546
_RS24905
RR42_RS24910: RR42_RS24910 - hypothetical protein, at 926,648 to 927,565
_RS24910
RR42_RS24915: RR42_RS24915 - hypothetical protein, at 927,910 to 928,101
_RS24915
RR42_RS24920: RR42_RS24920 - MFS transporter, at 928,201 to 929,736
_RS24920
Position (kb) 926
927
928 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 925.679 kb on - strand at 925.744 kb on + strand, within RR42_RS24905 at 925.925 kb on - strand, within RR42_RS24905 at 926.000 kb on - strand, within RR42_RS24905 at 926.179 kb on + strand, within RR42_RS24905 at 926.180 kb on - strand, within RR42_RS24905 at 926.248 kb on + strand, within RR42_RS24905 at 926.384 kb on - strand, within RR42_RS24905 at 926.479 kb on + strand at 926.479 kb on + strand at 926.479 kb on + strand at 926.480 kb on - strand at 926.480 kb on - strand at 926.480 kb on - strand at 926.480 kb on - strand at 926.516 kb on - strand at 926.519 kb on + strand at 926.519 kb on + strand at 926.562 kb on + strand at 926.649 kb on + strand at 926.650 kb on - strand at 926.650 kb on - strand at 926.650 kb on - strand at 926.703 kb on + strand at 926.703 kb on + strand at 926.718 kb on + strand at 926.718 kb on + strand at 926.718 kb on + strand at 926.871 kb on + strand, within RR42_RS24910 at 926.871 kb on + strand, within RR42_RS24910 at 926.871 kb on + strand, within RR42_RS24910 at 926.880 kb on + strand, within RR42_RS24910 at 926.955 kb on + strand, within RR42_RS24910 at 927.208 kb on - strand, within RR42_RS24910 at 927.258 kb on + strand, within RR42_RS24910 at 927.259 kb on - strand, within RR42_RS24910 at 927.259 kb on - strand, within RR42_RS24910 at 927.358 kb on - strand, within RR42_RS24910 at 927.471 kb on + strand, within RR42_RS24910 at 927.550 kb on + strand at 927.617 kb on + strand at 927.617 kb on + strand at 927.618 kb on - strand at 927.618 kb on - strand at 927.798 kb on - strand at 927.857 kb on - strand at 927.857 kb on - strand at 927.909 kb on + strand at 927.910 kb on - strand at 927.910 kb on - strand at 927.960 kb on + strand, within RR42_RS24915 at 927.960 kb on + strand, within RR42_RS24915 at 927.961 kb on - strand, within RR42_RS24915 at 928.046 kb on + strand, within RR42_RS24915 at 928.047 kb on - strand, within RR42_RS24915 at 928.047 kb on - strand, within RR42_RS24915 at 928.047 kb on - strand, within RR42_RS24915 at 928.047 kb on - strand, within RR42_RS24915 at 928.162 kb on + strand at 928.276 kb on + strand at 928.369 kb on + strand, within RR42_RS24920 at 928.369 kb on + strand, within RR42_RS24920 at 928.370 kb on - strand, within RR42_RS24920 at 928.439 kb on - strand, within RR42_RS24920 at 928.537 kb on + strand, within RR42_RS24920
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 925,679 - -1.2 925,744 + RR42_RS24905 0.14 +0.8 925,925 - RR42_RS24905 0.34 -2.5 926,000 - RR42_RS24905 0.42 -4.4 926,179 + RR42_RS24905 0.61 +0.5 926,180 - RR42_RS24905 0.61 -3.0 926,248 + RR42_RS24905 0.68 -0.1 926,384 - RR42_RS24905 0.83 +1.0 926,479 + -0.4 926,479 + -1.9 926,479 + +0.6 926,480 - -0.9 926,480 - -1.8 926,480 - -1.3 926,480 - +0.7 926,516 - -0.2 926,519 + +3.1 926,519 + +0.2 926,562 + +2.4 926,649 + +1.0 926,650 - -1.6 926,650 - +2.1 926,650 - +0.5 926,703 + +0.2 926,703 + +0.0 926,718 + +0.1 926,718 + +0.1 926,718 + -0.5 926,871 + RR42_RS24910 0.24 -2.0 926,871 + RR42_RS24910 0.24 -3.8 926,871 + RR42_RS24910 0.24 -2.5 926,880 + RR42_RS24910 0.25 -0.6 926,955 + RR42_RS24910 0.33 -0.2 927,208 - RR42_RS24910 0.61 +0.5 927,258 + RR42_RS24910 0.66 -0.9 927,259 - RR42_RS24910 0.67 +0.5 927,259 - RR42_RS24910 0.67 +0.9 927,358 - RR42_RS24910 0.77 +0.6 927,471 + RR42_RS24910 0.90 +1.2 927,550 + -3.5 927,617 + -3.2 927,617 + -0.1 927,618 - +0.8 927,618 - +0.3 927,798 - +0.7 927,857 - -1.7 927,857 - -1.0 927,909 + +1.1 927,910 - -3.3 927,910 - -1.7 927,960 + RR42_RS24915 0.26 +0.4 927,960 + RR42_RS24915 0.26 -2.6 927,961 - RR42_RS24915 0.27 -3.0 928,046 + RR42_RS24915 0.71 -1.5 928,047 - RR42_RS24915 0.71 +1.6 928,047 - RR42_RS24915 0.71 -2.8 928,047 - RR42_RS24915 0.71 -2.7 928,047 - RR42_RS24915 0.71 -1.0 928,162 + -4.4 928,276 + -1.3 928,369 + RR42_RS24920 0.11 -3.2 928,369 + RR42_RS24920 0.11 -3.4 928,370 - RR42_RS24920 0.11 -0.2 928,439 - RR42_RS24920 0.15 +0.3 928,537 + RR42_RS24920 0.22 -1.5
Or see this region's nucleotide sequence