Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24805 and RR42_RS24810 are separated by 13 nucleotides RR42_RS24810 and RR42_RS24815 are separated by 59 nucleotides RR42_RS24815 and RR42_RS24820 are separated by 6 nucleotides
RR42_RS24805: RR42_RS24805 - thiolase, at 902,967 to 904,181
_RS24805
RR42_RS24810: RR42_RS24810 - hypothetical protein, at 904,195 to 904,602
_RS24810
RR42_RS24815: RR42_RS24815 - hypothetical protein, at 904,662 to 905,681
_RS24815
RR42_RS24820: RR42_RS24820 - hypothetical protein, at 905,688 to 906,893
_RS24820
Position (kb) 904
905
906 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 903.679 kb on - strand, within RR42_RS24805 at 903.714 kb on + strand, within RR42_RS24805 at 903.715 kb on - strand, within RR42_RS24805 at 903.715 kb on - strand, within RR42_RS24805 at 903.943 kb on - strand, within RR42_RS24805 at 904.285 kb on + strand, within RR42_RS24810 at 904.286 kb on - strand, within RR42_RS24810 at 904.454 kb on - strand, within RR42_RS24810 at 904.487 kb on - strand, within RR42_RS24810 at 904.638 kb on + strand at 904.648 kb on + strand at 904.649 kb on - strand at 904.703 kb on - strand at 905.067 kb on + strand, within RR42_RS24815 at 905.067 kb on + strand, within RR42_RS24815 at 905.067 kb on + strand, within RR42_RS24815 at 905.238 kb on + strand, within RR42_RS24815 at 905.442 kb on + strand, within RR42_RS24815 at 905.667 kb on + strand at 905.705 kb on - strand at 905.705 kb on - strand at 906.062 kb on - strand, within RR42_RS24820 at 906.062 kb on - strand, within RR42_RS24820 at 906.334 kb on - strand, within RR42_RS24820 at 906.402 kb on + strand, within RR42_RS24820
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 903,679 - RR42_RS24805 0.59 +0.1 903,714 + RR42_RS24805 0.61 +1.7 903,715 - RR42_RS24805 0.62 +0.6 903,715 - RR42_RS24805 0.62 +0.7 903,943 - RR42_RS24805 0.80 -2.3 904,285 + RR42_RS24810 0.22 -2.6 904,286 - RR42_RS24810 0.22 -3.4 904,454 - RR42_RS24810 0.63 +0.8 904,487 - RR42_RS24810 0.72 +0.2 904,638 + +1.1 904,648 + -0.8 904,649 - +0.8 904,703 - -0.3 905,067 + RR42_RS24815 0.40 -0.6 905,067 + RR42_RS24815 0.40 -3.3 905,067 + RR42_RS24815 0.40 +0.7 905,238 + RR42_RS24815 0.56 +1.2 905,442 + RR42_RS24815 0.76 +1.3 905,667 + -2.6 905,705 - +2.7 905,705 - +0.0 906,062 - RR42_RS24820 0.31 +0.5 906,062 - RR42_RS24820 0.31 -0.0 906,334 - RR42_RS24820 0.54 -3.8 906,402 + RR42_RS24820 0.59 -0.0
Or see this region's nucleotide sequence