Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24575 and RR42_RS24580 are separated by 59 nucleotides RR42_RS24580 and RR42_RS24585 are separated by 77 nucleotides
RR42_RS24575: RR42_RS24575 - endoribonuclease L-PSP, at 846,981 to 847,394
_RS24575
RR42_RS24580: RR42_RS24580 - hypothetical protein, at 847,454 to 848,818
_RS24580
RR42_RS24585: RR42_RS24585 - hypothetical protein, at 848,896 to 850,731
_RS24585
Position (kb) 847
848
849 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 846.650 kb on - strand at 846.915 kb on - strand at 846.961 kb on + strand at 846.995 kb on + strand at 847.035 kb on + strand, within RR42_RS24575 at 847.036 kb on - strand, within RR42_RS24575 at 847.282 kb on - strand, within RR42_RS24575 at 847.437 kb on - strand at 847.500 kb on + strand at 847.500 kb on + strand at 847.501 kb on - strand at 847.580 kb on - strand at 847.638 kb on - strand, within RR42_RS24580 at 847.709 kb on + strand, within RR42_RS24580 at 847.709 kb on + strand, within RR42_RS24580 at 847.710 kb on - strand at 847.710 kb on - strand, within RR42_RS24580 at 847.778 kb on + strand, within RR42_RS24580 at 847.828 kb on + strand, within RR42_RS24580 at 847.943 kb on + strand, within RR42_RS24580 at 847.943 kb on + strand, within RR42_RS24580 at 847.943 kb on + strand, within RR42_RS24580 at 847.943 kb on + strand, within RR42_RS24580 at 847.944 kb on - strand, within RR42_RS24580 at 847.945 kb on + strand, within RR42_RS24580 at 847.945 kb on + strand, within RR42_RS24580 at 847.945 kb on + strand, within RR42_RS24580 at 847.945 kb on + strand, within RR42_RS24580 at 847.946 kb on - strand, within RR42_RS24580 at 847.946 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 848.177 kb on + strand, within RR42_RS24580 at 848.178 kb on - strand, within RR42_RS24580 at 848.204 kb on + strand, within RR42_RS24580 at 848.204 kb on + strand, within RR42_RS24580 at 848.205 kb on - strand, within RR42_RS24580 at 848.207 kb on + strand, within RR42_RS24580 at 848.286 kb on - strand, within RR42_RS24580 at 848.372 kb on + strand, within RR42_RS24580 at 848.372 kb on + strand, within RR42_RS24580 at 848.390 kb on + strand, within RR42_RS24580 at 848.391 kb on - strand, within RR42_RS24580 at 848.391 kb on - strand, within RR42_RS24580 at 848.391 kb on - strand, within RR42_RS24580 at 848.534 kb on + strand, within RR42_RS24580 at 848.535 kb on - strand, within RR42_RS24580 at 848.535 kb on - strand, within RR42_RS24580 at 848.576 kb on + strand, within RR42_RS24580 at 848.576 kb on + strand, within RR42_RS24580 at 848.577 kb on - strand, within RR42_RS24580 at 848.672 kb on + strand, within RR42_RS24580 at 848.672 kb on + strand, within RR42_RS24580 at 848.694 kb on - strand at 848.968 kb on + strand at 848.969 kb on - strand at 849.020 kb on + strand at 849.176 kb on - strand, within RR42_RS24585 at 849.184 kb on + strand, within RR42_RS24585 at 849.262 kb on + strand, within RR42_RS24585 at 849.370 kb on - strand, within RR42_RS24585 at 849.580 kb on + strand, within RR42_RS24585 at 849.580 kb on + strand, within RR42_RS24585 at 849.581 kb on - strand, within RR42_RS24585
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 846,650 - +1.8 846,915 - +0.3 846,961 + +0.6 846,995 + +0.6 847,035 + RR42_RS24575 0.13 -0.9 847,036 - RR42_RS24575 0.13 -2.9 847,282 - RR42_RS24575 0.73 -0.1 847,437 - +0.5 847,500 + +1.3 847,500 + +1.8 847,501 - +1.3 847,580 - +1.0 847,638 - RR42_RS24580 0.13 -0.2 847,709 + RR42_RS24580 0.19 -0.8 847,709 + RR42_RS24580 0.19 -2.1 847,710 - +1.1 847,710 - RR42_RS24580 0.19 +0.0 847,778 + RR42_RS24580 0.24 -4.2 847,828 + RR42_RS24580 0.27 -3.5 847,943 + RR42_RS24580 0.36 +0.4 847,943 + RR42_RS24580 0.36 -2.5 847,943 + RR42_RS24580 0.36 +0.3 847,943 + RR42_RS24580 0.36 -3.1 847,944 - RR42_RS24580 0.36 +0.9 847,945 + RR42_RS24580 0.36 -0.6 847,945 + RR42_RS24580 0.36 -0.5 847,945 + RR42_RS24580 0.36 -1.8 847,945 + RR42_RS24580 0.36 -3.1 847,946 - RR42_RS24580 0.36 +0.1 847,946 - RR42_RS24580 0.36 -3.8 847,950 - RR42_RS24580 0.36 +0.3 847,950 - RR42_RS24580 0.36 +0.0 847,950 - RR42_RS24580 0.36 -0.6 847,950 - RR42_RS24580 0.36 -0.2 847,950 - RR42_RS24580 0.36 -0.9 848,177 + RR42_RS24580 0.53 -1.9 848,178 - RR42_RS24580 0.53 +0.5 848,204 + RR42_RS24580 0.55 -4.1 848,204 + RR42_RS24580 0.55 -0.3 848,205 - RR42_RS24580 0.55 -2.5 848,207 + RR42_RS24580 0.55 +2.2 848,286 - RR42_RS24580 0.61 -2.3 848,372 + RR42_RS24580 0.67 +0.7 848,372 + RR42_RS24580 0.67 +0.3 848,390 + RR42_RS24580 0.69 -0.2 848,391 - RR42_RS24580 0.69 -1.0 848,391 - RR42_RS24580 0.69 -1.4 848,391 - RR42_RS24580 0.69 -2.8 848,534 + RR42_RS24580 0.79 +0.7 848,535 - RR42_RS24580 0.79 -1.0 848,535 - RR42_RS24580 0.79 -0.1 848,576 + RR42_RS24580 0.82 +1.0 848,576 + RR42_RS24580 0.82 -0.7 848,577 - RR42_RS24580 0.82 +1.4 848,672 + RR42_RS24580 0.89 +0.7 848,672 + RR42_RS24580 0.89 -1.0 848,694 - -2.7 848,968 + +1.0 848,969 - +0.1 849,020 + +1.3 849,176 - RR42_RS24585 0.15 +1.5 849,184 + RR42_RS24585 0.16 +0.7 849,262 + RR42_RS24585 0.20 -0.7 849,370 - RR42_RS24585 0.26 +1.5 849,580 + RR42_RS24585 0.37 +0.9 849,580 + RR42_RS24585 0.37 -2.5 849,581 - RR42_RS24585 0.37 +1.9
Or see this region's nucleotide sequence