Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24550

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24545 and RR42_RS24550 are separated by 714 nucleotidesRR42_RS24550 and RR42_RS24555 are separated by 818 nucleotides RR42_RS24545: RR42_RS24545 - hypothetical protein, at 837,567 to 839,207 _RS24545 RR42_RS24550: RR42_RS24550 - hypothetical protein, at 839,922 to 840,104 _RS24550 RR42_RS24555: RR42_RS24555 - succinate-semialdehyde dehydrogenase, at 840,923 to 842,407 _RS24555 Position (kb) 839 840 841Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 838.937 kb on + strand, within RR42_RS24545at 838.937 kb on + strand, within RR42_RS24545at 838.938 kb on - strand, within RR42_RS24545at 838.938 kb on - strand, within RR42_RS24545at 839.114 kb on - strandat 839.365 kb on + strandat 839.365 kb on + strandat 839.894 kb on + strandat 839.895 kb on - strandat 839.971 kb on - strand, within RR42_RS24550at 840.064 kb on - strand, within RR42_RS24550at 840.092 kb on + strandat 840.217 kb on - strandat 840.226 kb on - strandat 840.256 kb on + strandat 840.257 kb on - strandat 840.280 kb on + strandat 840.280 kb on + strandat 840.296 kb on - strandat 840.302 kb on + strandat 840.345 kb on + strandat 840.366 kb on + strandat 840.366 kb on + strandat 840.366 kb on + strandat 840.367 kb on - strandat 840.370 kb on - strandat 840.464 kb on + strandat 840.465 kb on - strandat 840.544 kb on - strandat 840.590 kb on + strandat 840.739 kb on + strandat 840.739 kb on + strandat 840.740 kb on - strandat 840.796 kb on + strandat 840.796 kb on + strandat 840.796 kb on + strandat 840.797 kb on - strandat 840.797 kb on - strandat 840.797 kb on - strandat 840.797 kb on - strandat 840.797 kb on - strandat 840.844 kb on - strandat 840.844 kb on - strandat 840.864 kb on + strandat 840.864 kb on + strandat 840.865 kb on - strandat 840.866 kb on + strandat 840.866 kb on + strandat 840.866 kb on + strandat 840.866 kb on + strandat 840.866 kb on + strandat 840.866 kb on + strandat 840.867 kb on - strandat 840.867 kb on - strandat 840.867 kb on - strandat 840.907 kb on + strandat 840.907 kb on + strandat 840.907 kb on + strandat 840.907 kb on + strandat 840.907 kb on + strandat 840.907 kb on + strandat 840.907 kb on + strandat 840.908 kb on - strandat 840.908 kb on - strandat 840.908 kb on - strandat 840.922 kb on - strandat 840.922 kb on - strandat 840.935 kb on - strandat 840.946 kb on + strandat 840.947 kb on - strandat 840.947 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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838,937 + RR42_RS24545 0.83 -0.4
838,937 + RR42_RS24545 0.83 -0.2
838,938 - RR42_RS24545 0.84 -1.1
838,938 - RR42_RS24545 0.84 +0.6
839,114 - +1.9
839,365 + +0.5
839,365 + +0.5
839,894 + +1.6
839,895 - +0.6
839,971 - RR42_RS24550 0.27 -1.5
840,064 - RR42_RS24550 0.78 -0.8
840,092 + +0.9
840,217 - -4.1
840,226 - +0.8
840,256 + -0.2
840,257 - -0.8
840,280 + -0.5
840,280 + -2.1
840,296 - +0.1
840,302 + +2.5
840,345 + +0.2
840,366 + -0.2
840,366 + -2.3
840,366 + -0.5
840,367 - -1.3
840,370 - -1.2
840,464 + -0.2
840,465 - +1.7
840,544 - -1.6
840,590 + +1.0
840,739 + -0.9
840,739 + -0.1
840,740 - -1.1
840,796 + +0.4
840,796 + -2.5
840,796 + -3.8
840,797 - -1.6
840,797 - -2.2
840,797 - -2.3
840,797 - +0.3
840,797 - -3.0
840,844 - -4.2
840,844 - -0.2
840,864 + -0.1
840,864 + +0.0
840,865 - -3.3
840,866 + -2.7
840,866 + +0.5
840,866 + -1.7
840,866 + -0.8
840,866 + +2.8
840,866 + +2.1
840,867 - +2.0
840,867 - +0.7
840,867 - -2.3
840,907 + +1.1
840,907 + -2.7
840,907 + +0.2
840,907 + +1.3
840,907 + -3.1
840,907 + +0.1
840,907 + +0.9
840,908 - -3.4
840,908 - +0.5
840,908 - +1.0
840,922 - -1.5
840,922 - -2.5
840,935 - +1.9
840,946 + +0.9
840,947 - +1.6
840,947 - +0.3

Or see this region's nucleotide sequence