Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24265 and RR42_RS24270 are separated by 98 nucleotides
RR42_RS24265: RR42_RS24265 - hypothetical protein, at 771,699 to 772,415
_RS24265
RR42_RS24270: RR42_RS24270 - hypothetical protein, at 772,514 to 773,482
_RS24270
Position (kb) 771
772
773 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 770.745 kb on + strand at 770.745 kb on + strand at 770.745 kb on + strand at 770.868 kb on - strand at 770.881 kb on + strand at 770.926 kb on + strand at 770.926 kb on + strand at 770.927 kb on - strand at 771.016 kb on + strand at 771.016 kb on + strand at 771.017 kb on - strand at 771.017 kb on - strand at 771.017 kb on - strand at 771.017 kb on - strand at 771.035 kb on + strand at 771.036 kb on - strand at 771.036 kb on - strand at 771.070 kb on + strand at 771.070 kb on + strand at 771.071 kb on - strand at 771.085 kb on + strand at 771.085 kb on + strand at 771.086 kb on - strand at 771.154 kb on + strand at 771.154 kb on + strand at 771.154 kb on + strand at 771.154 kb on + strand at 771.154 kb on + strand at 771.155 kb on - strand at 771.155 kb on - strand at 771.155 kb on - strand at 771.155 kb on - strand at 771.156 kb on + strand at 771.156 kb on + strand at 771.157 kb on - strand at 771.213 kb on + strand at 771.297 kb on + strand at 771.341 kb on + strand at 771.393 kb on + strand at 771.526 kb on - strand at 771.526 kb on - strand at 771.613 kb on - strand at 771.701 kb on - strand at 771.742 kb on + strand at 771.743 kb on - strand at 771.743 kb on - strand at 771.758 kb on + strand at 771.758 kb on + strand at 771.787 kb on - strand, within RR42_RS24265 at 771.896 kb on + strand, within RR42_RS24265 at 771.955 kb on + strand, within RR42_RS24265 at 771.959 kb on - strand, within RR42_RS24265 at 771.984 kb on + strand, within RR42_RS24265 at 771.985 kb on - strand, within RR42_RS24265 at 771.985 kb on - strand, within RR42_RS24265 at 772.035 kb on + strand, within RR42_RS24265 at 772.036 kb on - strand, within RR42_RS24265 at 772.036 kb on - strand, within RR42_RS24265 at 772.198 kb on + strand, within RR42_RS24265 at 772.198 kb on + strand, within RR42_RS24265 at 772.198 kb on + strand, within RR42_RS24265 at 772.199 kb on - strand, within RR42_RS24265 at 772.199 kb on - strand, within RR42_RS24265 at 772.199 kb on - strand, within RR42_RS24265 at 772.199 kb on - strand, within RR42_RS24265 at 772.199 kb on - strand, within RR42_RS24265 at 772.199 kb on - strand, within RR42_RS24265 at 772.459 kb on + strand at 772.460 kb on - strand at 772.460 kb on - strand at 772.463 kb on + strand at 772.463 kb on + strand at 772.464 kb on - strand at 772.526 kb on + strand at 772.527 kb on - strand at 772.580 kb on - strand at 772.580 kb on - strand at 772.580 kb on - strand at 772.580 kb on - strand at 772.755 kb on + strand, within RR42_RS24270 at 772.853 kb on - strand, within RR42_RS24270 at 772.938 kb on + strand, within RR42_RS24270 at 772.938 kb on + strand, within RR42_RS24270 at 772.939 kb on - strand at 773.164 kb on - strand, within RR42_RS24270 at 773.164 kb on - strand, within RR42_RS24270 at 773.164 kb on - strand, within RR42_RS24270 at 773.230 kb on - strand, within RR42_RS24270
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 770,745 + -0.7 770,745 + +0.6 770,745 + +0.7 770,868 - +0.6 770,881 + -2.4 770,926 + -0.6 770,926 + +0.5 770,927 - +0.1 771,016 + +1.6 771,016 + -0.3 771,017 - -1.7 771,017 - +0.4 771,017 - +0.5 771,017 - -2.8 771,035 + +0.2 771,036 - +2.7 771,036 - +0.4 771,070 + +1.4 771,070 + +0.4 771,071 - +2.2 771,085 + +0.7 771,085 + -0.5 771,086 - -3.5 771,154 + +0.1 771,154 + +0.5 771,154 + +1.1 771,154 + +0.4 771,154 + +2.6 771,155 - -2.0 771,155 - -2.8 771,155 - -0.4 771,155 - +0.1 771,156 + +2.2 771,156 + +1.0 771,157 - -1.1 771,213 + -2.9 771,297 + +2.0 771,341 + -3.8 771,393 + -0.4 771,526 - -1.5 771,526 - +0.4 771,613 - +1.8 771,701 - -3.2 771,742 + -0.7 771,743 - +0.8 771,743 - -1.4 771,758 + +1.0 771,758 + -3.1 771,787 - RR42_RS24265 0.12 +1.2 771,896 + RR42_RS24265 0.27 +0.5 771,955 + RR42_RS24265 0.36 -4.0 771,959 - RR42_RS24265 0.36 -0.6 771,984 + RR42_RS24265 0.40 -4.8 771,985 - RR42_RS24265 0.40 -3.7 771,985 - RR42_RS24265 0.40 +0.0 772,035 + RR42_RS24265 0.47 -3.1 772,036 - RR42_RS24265 0.47 -0.4 772,036 - RR42_RS24265 0.47 +1.7 772,198 + RR42_RS24265 0.70 -2.6 772,198 + RR42_RS24265 0.70 +0.7 772,198 + RR42_RS24265 0.70 +0.4 772,199 - RR42_RS24265 0.70 +1.3 772,199 - RR42_RS24265 0.70 -0.9 772,199 - RR42_RS24265 0.70 -0.0 772,199 - RR42_RS24265 0.70 +0.3 772,199 - RR42_RS24265 0.70 -3.2 772,199 - RR42_RS24265 0.70 -3.7 772,459 + +0.2 772,460 - -1.0 772,460 - -3.8 772,463 + -0.3 772,463 + -0.0 772,464 - +0.3 772,526 + +1.2 772,527 - -3.6 772,580 - +0.1 772,580 - -2.9 772,580 - -2.7 772,580 - +0.8 772,755 + RR42_RS24270 0.25 -2.2 772,853 - RR42_RS24270 0.35 +2.2 772,938 + RR42_RS24270 0.44 -0.6 772,938 + RR42_RS24270 0.44 +0.2 772,939 - +3.2 773,164 - RR42_RS24270 0.67 +0.9 773,164 - RR42_RS24270 0.67 +0.3 773,164 - RR42_RS24270 0.67 +0.4 773,230 - RR42_RS24270 0.74 +0.1
Or see this region's nucleotide sequence