Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24255 and RR42_RS24260 are separated by 428 nucleotides
RR42_RS24255: RR42_RS24255 - hypothetical protein, at 767,663 to 768,619
_RS24255
RR42_RS24260: RR42_RS24260 - hypothetical protein, at 769,048 to 769,824
_RS24260
Position (kb) 769
770 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 768.080 kb on + strand, within RR42_RS24255 at 768.081 kb on - strand, within RR42_RS24255 at 768.155 kb on + strand, within RR42_RS24255 at 768.155 kb on + strand, within RR42_RS24255 at 768.155 kb on + strand, within RR42_RS24255 at 768.155 kb on + strand, within RR42_RS24255 at 768.156 kb on - strand, within RR42_RS24255 at 768.203 kb on - strand, within RR42_RS24255 at 768.227 kb on + strand, within RR42_RS24255 at 768.227 kb on + strand, within RR42_RS24255 at 768.227 kb on + strand, within RR42_RS24255 at 768.227 kb on + strand, within RR42_RS24255 at 768.227 kb on + strand, within RR42_RS24255 at 768.446 kb on + strand, within RR42_RS24255 at 768.446 kb on + strand, within RR42_RS24255 at 768.447 kb on - strand, within RR42_RS24255 at 768.447 kb on - strand, within RR42_RS24255 at 768.447 kb on - strand, within RR42_RS24255 at 768.447 kb on - strand, within RR42_RS24255 at 768.525 kb on + strand at 768.525 kb on + strand at 768.526 kb on - strand at 768.564 kb on + strand at 768.564 kb on + strand at 768.564 kb on + strand at 768.564 kb on + strand at 768.565 kb on - strand at 768.565 kb on - strand at 768.565 kb on - strand at 768.565 kb on - strand at 768.583 kb on + strand at 768.584 kb on - strand at 768.586 kb on - strand at 768.617 kb on + strand at 768.758 kb on - strand at 768.786 kb on + strand at 768.786 kb on + strand at 768.857 kb on - strand at 768.943 kb on + strand at 768.943 kb on + strand at 768.943 kb on + strand at 768.943 kb on + strand at 768.964 kb on + strand at 768.964 kb on + strand at 769.026 kb on - strand at 769.026 kb on - strand at 769.034 kb on + strand at 769.175 kb on + strand, within RR42_RS24260 at 769.231 kb on + strand, within RR42_RS24260 at 769.318 kb on - strand, within RR42_RS24260 at 769.709 kb on + strand, within RR42_RS24260 at 769.726 kb on + strand, within RR42_RS24260 at 769.726 kb on + strand, within RR42_RS24260 at 769.726 kb on + strand, within RR42_RS24260 at 769.755 kb on + strand at 769.756 kb on - strand at 769.822 kb on + strand at 769.823 kb on - strand at 769.937 kb on + strand at 769.938 kb on - strand at 770.024 kb on + strand at 770.025 kb on - strand at 770.025 kb on - strand at 770.026 kb on + strand at 770.026 kb on + strand at 770.026 kb on + strand at 770.026 kb on + strand at 770.026 kb on + strand at 770.026 kb on + strand at 770.027 kb on - strand at 770.027 kb on - strand at 770.027 kb on - strand at 770.027 kb on - strand at 770.027 kb on - strand at 770.032 kb on + strand at 770.033 kb on - strand at 770.033 kb on - strand at 770.053 kb on + strand at 770.076 kb on + strand at 770.077 kb on - strand at 770.095 kb on + strand at 770.123 kb on + strand at 770.123 kb on + strand at 770.123 kb on + strand at 770.123 kb on + strand at 770.123 kb on + strand at 770.124 kb on - strand at 770.124 kb on - strand at 770.124 kb on - strand at 770.124 kb on - strand at 770.124 kb on - strand at 770.124 kb on - strand at 770.124 kb on - strand at 770.124 kb on - strand at 770.124 kb on - strand at 770.126 kb on - strand at 770.348 kb on - strand at 770.380 kb on + strand at 770.522 kb on + strand at 770.522 kb on + strand at 770.522 kb on + strand at 770.522 kb on + strand at 770.522 kb on + strand at 770.523 kb on - strand at 770.523 kb on - strand at 770.523 kb on - strand at 770.523 kb on - strand at 770.523 kb on - strand at 770.568 kb on + strand at 770.569 kb on - strand at 770.745 kb on + strand at 770.745 kb on + strand at 770.745 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 768,080 + RR42_RS24255 0.44 +1.4 768,081 - RR42_RS24255 0.44 -3.6 768,155 + RR42_RS24255 0.51 -3.1 768,155 + RR42_RS24255 0.51 +1.4 768,155 + RR42_RS24255 0.51 -1.9 768,155 + RR42_RS24255 0.51 +0.4 768,156 - RR42_RS24255 0.52 +0.3 768,203 - RR42_RS24255 0.56 -3.1 768,227 + RR42_RS24255 0.59 -3.5 768,227 + RR42_RS24255 0.59 +2.3 768,227 + RR42_RS24255 0.59 +1.2 768,227 + RR42_RS24255 0.59 +1.6 768,227 + RR42_RS24255 0.59 +1.0 768,446 + RR42_RS24255 0.82 +1.6 768,446 + RR42_RS24255 0.82 -0.5 768,447 - RR42_RS24255 0.82 +1.4 768,447 - RR42_RS24255 0.82 +0.6 768,447 - RR42_RS24255 0.82 -4.1 768,447 - RR42_RS24255 0.82 -3.8 768,525 + +1.1 768,525 + +1.3 768,526 - +3.0 768,564 + -4.0 768,564 + +1.0 768,564 + +1.7 768,564 + +0.5 768,565 - +0.3 768,565 - +0.1 768,565 - +0.8 768,565 - -2.4 768,583 + -0.5 768,584 - -0.7 768,586 - +0.7 768,617 + -1.4 768,758 - +2.4 768,786 + +2.1 768,786 + +0.4 768,857 - -2.9 768,943 + -0.5 768,943 + +0.3 768,943 + +1.6 768,943 + +0.6 768,964 + -0.2 768,964 + -1.7 769,026 - -3.4 769,026 - +0.2 769,034 + -2.2 769,175 + RR42_RS24260 0.16 -0.1 769,231 + RR42_RS24260 0.24 +1.7 769,318 - RR42_RS24260 0.35 +1.2 769,709 + RR42_RS24260 0.85 -0.3 769,726 + RR42_RS24260 0.87 +0.1 769,726 + RR42_RS24260 0.87 +1.5 769,726 + RR42_RS24260 0.87 -3.5 769,755 + -0.7 769,756 - +0.6 769,822 + +0.1 769,823 - -2.7 769,937 + +1.0 769,938 - +1.2 770,024 + -0.7 770,025 - +1.4 770,025 - -1.2 770,026 + +0.5 770,026 + +1.2 770,026 + -0.2 770,026 + +0.7 770,026 + +0.9 770,026 + -0.3 770,027 - -2.9 770,027 - +0.3 770,027 - -0.2 770,027 - -1.2 770,027 - +1.5 770,032 + -2.8 770,033 - +0.3 770,033 - -0.9 770,053 + +0.3 770,076 + -0.7 770,077 - -0.2 770,095 + -0.5 770,123 + +2.8 770,123 + +1.2 770,123 + -0.7 770,123 + +0.9 770,123 + +1.2 770,124 - +1.4 770,124 - -2.3 770,124 - +0.0 770,124 - +1.5 770,124 - -2.5 770,124 - -1.0 770,124 - +0.9 770,124 - +0.8 770,124 - -2.8 770,126 - -1.5 770,348 - +1.5 770,380 + +0.2 770,522 + -0.6 770,522 + +0.7 770,522 + -4.5 770,522 + -3.6 770,522 + +0.3 770,523 - +0.8 770,523 - +0.2 770,523 - -1.7 770,523 - +0.3 770,523 - -1.7 770,568 + -3.8 770,569 - +1.4 770,745 + -0.7 770,745 + +0.6 770,745 + +0.7
Or see this region's nucleotide sequence