Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24245 and RR42_RS24250 are separated by 255 nucleotides RR42_RS24250 and RR42_RS24255 overlap by 4 nucleotides
RR42_RS24245: RR42_RS24245 - porin, at 765,255 to 766,322
_RS24245
RR42_RS24250: RR42_RS24250 - (2Fe-2S)-binding protein, at 766,578 to 767,666
_RS24250
RR42_RS24255: RR42_RS24255 - hypothetical protein, at 767,663 to 768,619
_RS24255
Position (kb) 766
767
768 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 765.586 kb on - strand, within RR42_RS24245 at 765.595 kb on + strand, within RR42_RS24245 at 765.595 kb on + strand, within RR42_RS24245 at 765.595 kb on + strand, within RR42_RS24245 at 765.596 kb on - strand, within RR42_RS24245 at 765.596 kb on - strand, within RR42_RS24245 at 765.632 kb on + strand, within RR42_RS24245 at 765.633 kb on - strand, within RR42_RS24245 at 765.634 kb on + strand, within RR42_RS24245 at 765.657 kb on - strand, within RR42_RS24245 at 765.657 kb on - strand, within RR42_RS24245 at 765.660 kb on + strand, within RR42_RS24245 at 765.660 kb on + strand, within RR42_RS24245 at 765.660 kb on + strand, within RR42_RS24245 at 765.661 kb on - strand, within RR42_RS24245 at 765.661 kb on - strand, within RR42_RS24245 at 765.661 kb on - strand, within RR42_RS24245 at 765.696 kb on + strand, within RR42_RS24245 at 765.731 kb on + strand, within RR42_RS24245 at 765.732 kb on - strand, within RR42_RS24245 at 765.735 kb on + strand, within RR42_RS24245 at 765.840 kb on + strand, within RR42_RS24245 at 765.840 kb on + strand, within RR42_RS24245 at 765.841 kb on - strand, within RR42_RS24245 at 765.935 kb on + strand, within RR42_RS24245 at 765.935 kb on + strand, within RR42_RS24245 at 765.935 kb on + strand, within RR42_RS24245 at 765.958 kb on - strand, within RR42_RS24245 at 765.966 kb on + strand, within RR42_RS24245 at 765.966 kb on + strand, within RR42_RS24245 at 765.967 kb on - strand, within RR42_RS24245 at 765.967 kb on - strand, within RR42_RS24245 at 765.967 kb on - strand, within RR42_RS24245 at 765.971 kb on + strand, within RR42_RS24245 at 766.028 kb on + strand, within RR42_RS24245 at 766.028 kb on + strand, within RR42_RS24245 at 766.038 kb on + strand, within RR42_RS24245 at 766.038 kb on + strand, within RR42_RS24245 at 766.039 kb on - strand, within RR42_RS24245 at 766.039 kb on - strand, within RR42_RS24245 at 766.095 kb on + strand, within RR42_RS24245 at 766.095 kb on + strand, within RR42_RS24245 at 766.095 kb on + strand, within RR42_RS24245 at 766.158 kb on + strand, within RR42_RS24245 at 766.158 kb on + strand, within RR42_RS24245 at 766.159 kb on - strand, within RR42_RS24245 at 766.159 kb on - strand, within RR42_RS24245 at 766.159 kb on - strand, within RR42_RS24245 at 766.159 kb on - strand, within RR42_RS24245 at 766.176 kb on - strand, within RR42_RS24245 at 766.185 kb on + strand, within RR42_RS24245 at 766.186 kb on - strand, within RR42_RS24245 at 766.186 kb on - strand, within RR42_RS24245 at 766.229 kb on + strand at 766.229 kb on + strand at 766.229 kb on + strand at 766.230 kb on - strand at 766.249 kb on + strand at 766.253 kb on + strand at 766.308 kb on - strand at 766.308 kb on - strand at 766.415 kb on + strand at 766.428 kb on + strand at 766.429 kb on - strand at 766.429 kb on - strand at 766.429 kb on - strand at 766.445 kb on + strand at 766.577 kb on + strand at 766.589 kb on - strand at 766.600 kb on - strand at 766.600 kb on - strand at 766.600 kb on - strand at 766.779 kb on + strand, within RR42_RS24250 at 766.814 kb on + strand, within RR42_RS24250 at 766.814 kb on + strand, within RR42_RS24250 at 766.815 kb on - strand, within RR42_RS24250 at 766.858 kb on + strand, within RR42_RS24250 at 766.859 kb on - strand, within RR42_RS24250 at 766.859 kb on - strand, within RR42_RS24250 at 766.863 kb on - strand, within RR42_RS24250 at 766.988 kb on + strand, within RR42_RS24250 at 766.988 kb on + strand, within RR42_RS24250 at 767.018 kb on - strand, within RR42_RS24250 at 767.118 kb on - strand, within RR42_RS24250 at 767.252 kb on + strand, within RR42_RS24250 at 767.339 kb on + strand, within RR42_RS24250 at 767.339 kb on + strand, within RR42_RS24250 at 767.340 kb on - strand, within RR42_RS24250 at 767.367 kb on + strand, within RR42_RS24250 at 767.367 kb on + strand, within RR42_RS24250 at 767.367 kb on + strand, within RR42_RS24250 at 767.367 kb on + strand, within RR42_RS24250 at 767.368 kb on - strand, within RR42_RS24250 at 767.370 kb on + strand, within RR42_RS24250 at 767.371 kb on - strand, within RR42_RS24250 at 767.371 kb on - strand, within RR42_RS24250 at 767.391 kb on + strand, within RR42_RS24250 at 767.391 kb on + strand, within RR42_RS24250 at 767.391 kb on + strand, within RR42_RS24250 at 767.392 kb on - strand, within RR42_RS24250 at 767.392 kb on - strand, within RR42_RS24250 at 767.499 kb on + strand, within RR42_RS24250 at 767.525 kb on + strand, within RR42_RS24250 at 767.525 kb on + strand, within RR42_RS24250 at 767.525 kb on + strand, within RR42_RS24250 at 767.526 kb on - strand, within RR42_RS24250 at 767.526 kb on - strand, within RR42_RS24250 at 767.526 kb on - strand, within RR42_RS24250 at 767.528 kb on + strand, within RR42_RS24250 at 767.528 kb on + strand, within RR42_RS24250 at 767.625 kb on - strand at 767.625 kb on - strand at 767.671 kb on + strand at 767.672 kb on - strand at 767.672 kb on - strand at 767.672 kb on - strand at 767.706 kb on + strand at 767.706 kb on + strand at 767.706 kb on + strand at 767.706 kb on + strand at 767.706 kb on + strand at 767.707 kb on - strand at 767.707 kb on - strand at 767.707 kb on - strand at 767.707 kb on - strand at 767.718 kb on + strand at 767.815 kb on - strand, within RR42_RS24255 at 767.815 kb on - strand, within RR42_RS24255 at 767.815 kb on - strand, within RR42_RS24255 at 767.815 kb on - strand, within RR42_RS24255 at 767.815 kb on - strand, within RR42_RS24255 at 767.815 kb on - strand, within RR42_RS24255 at 767.815 kb on - strand, within RR42_RS24255 at 767.823 kb on - strand, within RR42_RS24255 at 768.019 kb on + strand, within RR42_RS24255 at 768.020 kb on - strand, within RR42_RS24255 at 768.080 kb on + strand, within RR42_RS24255 at 768.081 kb on - strand, within RR42_RS24255 at 768.155 kb on + strand, within RR42_RS24255 at 768.155 kb on + strand, within RR42_RS24255 at 768.155 kb on + strand, within RR42_RS24255 at 768.155 kb on + strand, within RR42_RS24255 at 768.156 kb on - strand, within RR42_RS24255 at 768.203 kb on - strand, within RR42_RS24255 at 768.227 kb on + strand, within RR42_RS24255 at 768.227 kb on + strand, within RR42_RS24255 at 768.227 kb on + strand, within RR42_RS24255 at 768.227 kb on + strand, within RR42_RS24255 at 768.227 kb on + strand, within RR42_RS24255 at 768.446 kb on + strand, within RR42_RS24255 at 768.446 kb on + strand, within RR42_RS24255 at 768.447 kb on - strand, within RR42_RS24255 at 768.447 kb on - strand, within RR42_RS24255 at 768.447 kb on - strand, within RR42_RS24255 at 768.447 kb on - strand, within RR42_RS24255 at 768.525 kb on + strand at 768.525 kb on + strand at 768.526 kb on - strand at 768.564 kb on + strand at 768.564 kb on + strand at 768.564 kb on + strand at 768.564 kb on + strand at 768.565 kb on - strand at 768.565 kb on - strand at 768.565 kb on - strand at 768.565 kb on - strand at 768.583 kb on + strand at 768.584 kb on - strand at 768.586 kb on - strand at 768.617 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 765,586 - RR42_RS24245 0.31 +2.0 765,595 + RR42_RS24245 0.32 +1.4 765,595 + RR42_RS24245 0.32 +0.9 765,595 + RR42_RS24245 0.32 -2.4 765,596 - RR42_RS24245 0.32 +1.2 765,596 - RR42_RS24245 0.32 -1.4 765,632 + RR42_RS24245 0.35 +0.8 765,633 - RR42_RS24245 0.35 +1.1 765,634 + RR42_RS24245 0.35 +0.7 765,657 - RR42_RS24245 0.38 -3.4 765,657 - RR42_RS24245 0.38 -0.0 765,660 + RR42_RS24245 0.38 -2.6 765,660 + RR42_RS24245 0.38 -3.2 765,660 + RR42_RS24245 0.38 -1.7 765,661 - RR42_RS24245 0.38 +0.2 765,661 - RR42_RS24245 0.38 +0.1 765,661 - RR42_RS24245 0.38 +1.5 765,696 + RR42_RS24245 0.41 -3.6 765,731 + RR42_RS24245 0.45 -1.6 765,732 - RR42_RS24245 0.45 +1.2 765,735 + RR42_RS24245 0.45 +0.7 765,840 + RR42_RS24245 0.55 -2.6 765,840 + RR42_RS24245 0.55 +1.5 765,841 - RR42_RS24245 0.55 +0.5 765,935 + RR42_RS24245 0.64 -0.3 765,935 + RR42_RS24245 0.64 -0.7 765,935 + RR42_RS24245 0.64 +1.1 765,958 - RR42_RS24245 0.66 +1.4 765,966 + RR42_RS24245 0.67 -0.4 765,966 + RR42_RS24245 0.67 +1.2 765,967 - RR42_RS24245 0.67 -1.0 765,967 - RR42_RS24245 0.67 +0.5 765,967 - RR42_RS24245 0.67 +0.3 765,971 + RR42_RS24245 0.67 +0.3 766,028 + RR42_RS24245 0.72 +0.3 766,028 + RR42_RS24245 0.72 -2.8 766,038 + RR42_RS24245 0.73 +1.0 766,038 + RR42_RS24245 0.73 -4.1 766,039 - RR42_RS24245 0.73 +0.1 766,039 - RR42_RS24245 0.73 +1.4 766,095 + RR42_RS24245 0.79 +1.3 766,095 + RR42_RS24245 0.79 -0.5 766,095 + RR42_RS24245 0.79 +0.5 766,158 + RR42_RS24245 0.85 +1.3 766,158 + RR42_RS24245 0.85 -1.2 766,159 - RR42_RS24245 0.85 +0.1 766,159 - RR42_RS24245 0.85 +0.9 766,159 - RR42_RS24245 0.85 -1.5 766,159 - RR42_RS24245 0.85 +0.9 766,176 - RR42_RS24245 0.86 +0.5 766,185 + RR42_RS24245 0.87 +1.8 766,186 - RR42_RS24245 0.87 +0.2 766,186 - RR42_RS24245 0.87 -1.1 766,229 + -0.9 766,229 + +2.3 766,229 + +1.0 766,230 - +2.9 766,249 + +1.4 766,253 + -2.2 766,308 - +1.5 766,308 - +0.0 766,415 + +1.0 766,428 + -0.5 766,429 - +1.4 766,429 - +0.1 766,429 - +0.2 766,445 + -5.2 766,577 + -0.5 766,589 - -0.1 766,600 - -1.2 766,600 - -2.5 766,600 - +0.1 766,779 + RR42_RS24250 0.18 -0.6 766,814 + RR42_RS24250 0.22 -1.2 766,814 + RR42_RS24250 0.22 +0.1 766,815 - RR42_RS24250 0.22 -3.9 766,858 + RR42_RS24250 0.26 +1.1 766,859 - RR42_RS24250 0.26 +0.4 766,859 - RR42_RS24250 0.26 -2.7 766,863 - RR42_RS24250 0.26 +1.7 766,988 + RR42_RS24250 0.38 +0.5 766,988 + RR42_RS24250 0.38 -0.8 767,018 - RR42_RS24250 0.40 +1.3 767,118 - RR42_RS24250 0.50 -3.1 767,252 + RR42_RS24250 0.62 -3.6 767,339 + RR42_RS24250 0.70 -1.5 767,339 + RR42_RS24250 0.70 +0.2 767,340 - RR42_RS24250 0.70 +3.3 767,367 + RR42_RS24250 0.72 +0.2 767,367 + RR42_RS24250 0.72 -1.7 767,367 + RR42_RS24250 0.72 -1.3 767,367 + RR42_RS24250 0.72 -0.9 767,368 - RR42_RS24250 0.73 +0.9 767,370 + RR42_RS24250 0.73 +0.1 767,371 - RR42_RS24250 0.73 -3.1 767,371 - RR42_RS24250 0.73 -2.5 767,391 + RR42_RS24250 0.75 -0.5 767,391 + RR42_RS24250 0.75 +0.6 767,391 + RR42_RS24250 0.75 +1.4 767,392 - RR42_RS24250 0.75 +2.7 767,392 - RR42_RS24250 0.75 +2.0 767,499 + RR42_RS24250 0.85 -3.3 767,525 + RR42_RS24250 0.87 -4.1 767,525 + RR42_RS24250 0.87 +0.0 767,525 + RR42_RS24250 0.87 -3.9 767,526 - RR42_RS24250 0.87 -0.8 767,526 - RR42_RS24250 0.87 -1.5 767,526 - RR42_RS24250 0.87 +2.1 767,528 + RR42_RS24250 0.87 -0.6 767,528 + RR42_RS24250 0.87 -0.4 767,625 - +0.8 767,625 - -0.6 767,671 + -0.7 767,672 - +0.4 767,672 - +1.9 767,672 - -3.2 767,706 + -1.3 767,706 + +0.7 767,706 + +0.7 767,706 + -1.0 767,706 + +0.6 767,707 - -1.5 767,707 - -3.8 767,707 - +0.4 767,707 - +0.2 767,718 + -4.1 767,815 - RR42_RS24255 0.16 -0.9 767,815 - RR42_RS24255 0.16 -4.1 767,815 - RR42_RS24255 0.16 -0.7 767,815 - RR42_RS24255 0.16 +2.5 767,815 - RR42_RS24255 0.16 +0.8 767,815 - RR42_RS24255 0.16 +0.8 767,815 - RR42_RS24255 0.16 +1.0 767,823 - RR42_RS24255 0.17 -3.7 768,019 + RR42_RS24255 0.37 +2.4 768,020 - RR42_RS24255 0.37 -2.0 768,080 + RR42_RS24255 0.44 +1.4 768,081 - RR42_RS24255 0.44 -3.6 768,155 + RR42_RS24255 0.51 -3.1 768,155 + RR42_RS24255 0.51 +1.4 768,155 + RR42_RS24255 0.51 -1.9 768,155 + RR42_RS24255 0.51 +0.4 768,156 - RR42_RS24255 0.52 +0.3 768,203 - RR42_RS24255 0.56 -3.1 768,227 + RR42_RS24255 0.59 -3.5 768,227 + RR42_RS24255 0.59 +2.3 768,227 + RR42_RS24255 0.59 +1.2 768,227 + RR42_RS24255 0.59 +1.6 768,227 + RR42_RS24255 0.59 +1.0 768,446 + RR42_RS24255 0.82 +1.6 768,446 + RR42_RS24255 0.82 -0.5 768,447 - RR42_RS24255 0.82 +1.4 768,447 - RR42_RS24255 0.82 +0.6 768,447 - RR42_RS24255 0.82 -4.1 768,447 - RR42_RS24255 0.82 -3.8 768,525 + +1.1 768,525 + +1.3 768,526 - +3.0 768,564 + -4.0 768,564 + +1.0 768,564 + +1.7 768,564 + +0.5 768,565 - +0.3 768,565 - +0.1 768,565 - +0.8 768,565 - -2.4 768,583 + -0.5 768,584 - -0.7 768,586 - +0.7 768,617 + -1.4
Or see this region's nucleotide sequence