Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23905 and RR42_RS23910 overlap by 4 nucleotides RR42_RS23910 and RR42_RS23915 are separated by 50 nucleotides RR42_RS23915 and RR42_RS23920 overlap by 1 nucleotides RR42_RS23920 and RR42_RS23925 overlap by 4 nucleotides
RR42_RS23905: RR42_RS23905 - hypothetical protein, at 689,204 to 691,897
_RS23905
RR42_RS23910: RR42_RS23910 - hypothetical protein, at 691,894 to 692,343
_RS23910
RR42_RS23915: RR42_RS23915 - hypothetical protein, at 692,394 to 692,870
_RS23915
RR42_RS23920: RR42_RS23920 - hypothetical protein, at 692,870 to 693,496
_RS23920
RR42_RS23925: RR42_RS23925 - conjugal transfer protein, at 693,493 to 694,548
_RS23925
Position (kb) 692
693 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 691.440 kb on - strand, within RR42_RS23905 at 691.484 kb on + strand, within RR42_RS23905 at 691.484 kb on + strand, within RR42_RS23905 at 691.485 kb on - strand, within RR42_RS23905 at 691.601 kb on + strand, within RR42_RS23905 at 691.602 kb on - strand, within RR42_RS23905 at 691.602 kb on - strand, within RR42_RS23905 at 691.602 kb on - strand, within RR42_RS23905 at 691.844 kb on + strand at 691.845 kb on - strand at 691.877 kb on + strand at 691.878 kb on - strand at 691.878 kb on - strand at 692.189 kb on + strand, within RR42_RS23910 at 692.189 kb on + strand, within RR42_RS23910 at 692.218 kb on + strand, within RR42_RS23910 at 692.453 kb on - strand, within RR42_RS23915 at 692.453 kb on - strand, within RR42_RS23915 at 692.668 kb on - strand, within RR42_RS23915 at 692.901 kb on + strand at 692.901 kb on + strand at 692.905 kb on - strand at 692.909 kb on - strand at 692.964 kb on - strand, within RR42_RS23920 at 693.138 kb on - strand, within RR42_RS23920 at 693.354 kb on - strand, within RR42_RS23920 at 693.392 kb on + strand, within RR42_RS23920 at 693.438 kb on + strand at 693.438 kb on + strand at 693.438 kb on + strand at 693.639 kb on + strand, within RR42_RS23925 at 693.818 kb on + strand, within RR42_RS23925 at 693.819 kb on - strand, within RR42_RS23925
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 691,440 - RR42_RS23905 0.83 +0.5 691,484 + RR42_RS23905 0.85 -4.6 691,484 + RR42_RS23905 0.85 +0.2 691,485 - RR42_RS23905 0.85 +0.2 691,601 + RR42_RS23905 0.89 +2.1 691,602 - RR42_RS23905 0.89 +1.0 691,602 - RR42_RS23905 0.89 -3.1 691,602 - RR42_RS23905 0.89 -1.4 691,844 + +1.4 691,845 - -0.6 691,877 + +0.1 691,878 - -1.2 691,878 - -0.3 692,189 + RR42_RS23910 0.66 -1.1 692,189 + RR42_RS23910 0.66 +1.7 692,218 + RR42_RS23910 0.72 -0.2 692,453 - RR42_RS23915 0.12 +0.4 692,453 - RR42_RS23915 0.12 -0.5 692,668 - RR42_RS23915 0.57 -1.2 692,901 + +0.2 692,901 + +2.6 692,905 - -1.5 692,909 - +1.3 692,964 - RR42_RS23920 0.15 +0.9 693,138 - RR42_RS23920 0.43 -2.5 693,354 - RR42_RS23920 0.77 +0.5 693,392 + RR42_RS23920 0.83 +1.1 693,438 + -1.2 693,438 + -4.2 693,438 + -0.1 693,639 + RR42_RS23925 0.14 -0.2 693,818 + RR42_RS23925 0.31 +1.5 693,819 - RR42_RS23925 0.31 -1.6
Or see this region's nucleotide sequence