Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23340 and RR42_RS23345 are separated by 104 nucleotides RR42_RS23345 and RR42_RS23350 are separated by 296 nucleotides
RR42_RS23340: RR42_RS23340 - RNA ligase, at 567,044 to 568,270
_RS23340
RR42_RS23345: RR42_RS23345 - hypothetical protein, at 568,375 to 569,220
_RS23345
RR42_RS23350: RR42_RS23350 - flagellar biosynthesis protein FliR, at 569,517 to 570,302
_RS23350
Position (kb) 568
569
570 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 567.497 kb on + strand, within RR42_RS23340 at 567.498 kb on - strand, within RR42_RS23340 at 567.652 kb on + strand, within RR42_RS23340 at 567.750 kb on - strand, within RR42_RS23340 at 567.886 kb on + strand, within RR42_RS23340 at 567.886 kb on + strand, within RR42_RS23340 at 567.887 kb on - strand, within RR42_RS23340 at 567.887 kb on - strand, within RR42_RS23340 at 567.887 kb on - strand, within RR42_RS23340 at 567.890 kb on + strand, within RR42_RS23340 at 567.890 kb on + strand, within RR42_RS23340 at 567.890 kb on + strand, within RR42_RS23340 at 568.005 kb on - strand, within RR42_RS23340 at 568.005 kb on - strand, within RR42_RS23340 at 568.182 kb on - strand at 568.486 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.668 kb on - strand, within RR42_RS23345 at 568.668 kb on - strand, within RR42_RS23345 at 568.668 kb on - strand, within RR42_RS23345 at 568.862 kb on - strand, within RR42_RS23345 at 569.202 kb on - strand at 569.358 kb on + strand at 569.358 kb on + strand at 569.435 kb on + strand at 569.435 kb on + strand at 569.466 kb on + strand at 569.467 kb on - strand at 569.467 kb on - strand at 569.467 kb on - strand at 569.467 kb on - strand at 569.484 kb on - strand at 569.553 kb on - strand at 569.959 kb on + strand, within RR42_RS23350 at 569.959 kb on + strand, within RR42_RS23350 at 570.066 kb on + strand, within RR42_RS23350 at 570.066 kb on + strand, within RR42_RS23350 at 570.066 kb on + strand, within RR42_RS23350 at 570.067 kb on - strand, within RR42_RS23350 at 570.067 kb on - strand, within RR42_RS23350
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 567,497 + RR42_RS23340 0.37 +0.1 567,498 - RR42_RS23340 0.37 -3.2 567,652 + RR42_RS23340 0.50 -2.4 567,750 - RR42_RS23340 0.58 -3.0 567,886 + RR42_RS23340 0.69 -1.6 567,886 + RR42_RS23340 0.69 -0.1 567,887 - RR42_RS23340 0.69 -0.4 567,887 - RR42_RS23340 0.69 -0.5 567,887 - RR42_RS23340 0.69 -0.2 567,890 + RR42_RS23340 0.69 -1.5 567,890 + RR42_RS23340 0.69 -1.9 567,890 + RR42_RS23340 0.69 -0.5 568,005 - RR42_RS23340 0.78 -0.8 568,005 - RR42_RS23340 0.78 +0.1 568,182 - +1.1 568,486 + RR42_RS23345 0.13 -0.7 568,667 + RR42_RS23345 0.35 +1.7 568,667 + RR42_RS23345 0.35 -1.7 568,667 + RR42_RS23345 0.35 +1.6 568,667 + RR42_RS23345 0.35 -1.9 568,668 - RR42_RS23345 0.35 -0.9 568,668 - RR42_RS23345 0.35 +1.3 568,668 - RR42_RS23345 0.35 +0.4 568,862 - RR42_RS23345 0.58 -0.9 569,202 - -0.1 569,358 + +0.2 569,358 + -1.7 569,435 + -1.5 569,435 + +1.0 569,466 + -3.4 569,467 - -1.5 569,467 - +0.7 569,467 - -1.5 569,467 - -2.9 569,484 - +2.2 569,553 - +1.2 569,959 + RR42_RS23350 0.56 +2.0 569,959 + RR42_RS23350 0.56 +0.0 570,066 + RR42_RS23350 0.70 -2.4 570,066 + RR42_RS23350 0.70 +0.8 570,066 + RR42_RS23350 0.70 +3.7 570,067 - RR42_RS23350 0.70 -0.2 570,067 - RR42_RS23350 0.70 -2.5
Or see this region's nucleotide sequence