Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23300 and RR42_RS23305 are separated by 93 nucleotides RR42_RS23305 and RR42_RS23310 overlap by 4 nucleotides
RR42_RS23300: RR42_RS23300 - hypothetical protein, at 557,895 to 558,860
_RS23300
RR42_RS23305: RR42_RS23305 - hypothetical protein, at 558,954 to 559,529
_RS23305
RR42_RS23310: RR42_RS23310 - cytochrome B6, at 559,526 to 560,863
_RS23310
Position (kb) 558
559
560 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 557.990 kb on + strand at 557.990 kb on + strand at 557.991 kb on - strand at 557.991 kb on - strand at 558.052 kb on + strand, within RR42_RS23300 at 558.053 kb on - strand, within RR42_RS23300 at 558.053 kb on - strand, within RR42_RS23300 at 558.392 kb on - strand, within RR42_RS23300 at 558.392 kb on - strand, within RR42_RS23300 at 558.392 kb on - strand, within RR42_RS23300 at 558.460 kb on - strand, within RR42_RS23300 at 558.460 kb on - strand, within RR42_RS23300 at 558.572 kb on - strand, within RR42_RS23300 at 558.623 kb on + strand, within RR42_RS23300 at 558.788 kb on + strand at 558.789 kb on - strand at 558.793 kb on - strand at 558.920 kb on - strand at 558.920 kb on - strand at 559.317 kb on + strand, within RR42_RS23305 at 559.365 kb on + strand, within RR42_RS23305 at 559.566 kb on + strand at 559.567 kb on - strand at 559.567 kb on - strand at 559.761 kb on + strand, within RR42_RS23310 at 559.762 kb on - strand, within RR42_RS23310 at 559.762 kb on - strand, within RR42_RS23310 at 559.762 kb on - strand, within RR42_RS23310 at 560.127 kb on + strand, within RR42_RS23310 at 560.176 kb on - strand, within RR42_RS23310 at 560.406 kb on + strand, within RR42_RS23310 at 560.428 kb on - strand, within RR42_RS23310 at 560.428 kb on - strand, within RR42_RS23310 at 560.448 kb on + strand, within RR42_RS23310 at 560.449 kb on - strand, within RR42_RS23310 at 560.449 kb on - strand, within RR42_RS23310 at 560.457 kb on + strand, within RR42_RS23310 at 560.457 kb on + strand, within RR42_RS23310 at 560.457 kb on + strand, within RR42_RS23310 at 560.458 kb on - strand, within RR42_RS23310
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 557,990 + -3.8 557,990 + -0.8 557,991 - +0.4 557,991 - -1.7 558,052 + RR42_RS23300 0.16 -2.4 558,053 - RR42_RS23300 0.16 -0.3 558,053 - RR42_RS23300 0.16 +1.4 558,392 - RR42_RS23300 0.51 +1.3 558,392 - RR42_RS23300 0.51 +0.3 558,392 - RR42_RS23300 0.51 +1.6 558,460 - RR42_RS23300 0.58 -2.2 558,460 - RR42_RS23300 0.58 +1.4 558,572 - RR42_RS23300 0.70 +0.6 558,623 + RR42_RS23300 0.75 -1.5 558,788 + +1.2 558,789 - -1.5 558,793 - +1.4 558,920 - -1.3 558,920 - +0.7 559,317 + RR42_RS23305 0.63 -0.5 559,365 + RR42_RS23305 0.71 +0.0 559,566 + +1.9 559,567 - +0.3 559,567 - -0.7 559,761 + RR42_RS23310 0.18 +1.0 559,762 - RR42_RS23310 0.18 -2.3 559,762 - RR42_RS23310 0.18 +1.9 559,762 - RR42_RS23310 0.18 +0.0 560,127 + RR42_RS23310 0.45 +0.5 560,176 - RR42_RS23310 0.49 -1.6 560,406 + RR42_RS23310 0.66 +0.7 560,428 - RR42_RS23310 0.67 -2.0 560,428 - RR42_RS23310 0.67 -0.5 560,448 + RR42_RS23310 0.69 +0.3 560,449 - RR42_RS23310 0.69 +0.6 560,449 - RR42_RS23310 0.69 -0.2 560,457 + RR42_RS23310 0.70 +0.3 560,457 + RR42_RS23310 0.70 -2.2 560,457 + RR42_RS23310 0.70 -3.2 560,458 - RR42_RS23310 0.70 -1.5
Or see this region's nucleotide sequence