Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23090 and RR42_RS23095 are separated by 92 nucleotides RR42_RS23095 and RR42_RS23100 are separated by 89 nucleotides RR42_RS23100 and RR42_RS23105 are separated by 135 nucleotides RR42_RS23105 and RR42_RS23110 are separated by 193 nucleotides
RR42_RS23090: RR42_RS23090 - 2,5-dioxovalerate dehydrogenase, at 514,711 to 516,312
_RS23090
RR42_RS23095: RR42_RS23095 - Zn-dependent hydrolase, at 516,405 to 517,169
_RS23095
RR42_RS23100: RR42_RS23100 - AraC family transcriptional regulator, at 517,259 to 518,224
_RS23100
RR42_RS23105: RR42_RS23105 - hypothetical protein, at 518,360 to 518,818
_RS23105
RR42_RS23110: RR42_RS23110 - isochorismatase, at 519,012 to 519,542
_RS23110
Position (kb) 517
518
519 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 516.304 kb on - strand at 516.428 kb on + strand at 516.428 kb on + strand at 516.675 kb on + strand, within RR42_RS23095 at 516.695 kb on - strand, within RR42_RS23095 at 516.695 kb on - strand, within RR42_RS23095 at 516.715 kb on - strand, within RR42_RS23095 at 516.715 kb on - strand, within RR42_RS23095 at 516.872 kb on - strand, within RR42_RS23095 at 517.163 kb on + strand at 517.163 kb on + strand at 517.163 kb on + strand at 517.163 kb on + strand at 517.164 kb on - strand at 517.164 kb on - strand at 517.164 kb on - strand at 517.515 kb on + strand, within RR42_RS23100 at 517.584 kb on + strand, within RR42_RS23100 at 517.592 kb on + strand, within RR42_RS23100 at 517.592 kb on + strand, within RR42_RS23100 at 517.592 kb on + strand, within RR42_RS23100 at 517.593 kb on - strand, within RR42_RS23100 at 517.593 kb on - strand, within RR42_RS23100 at 517.593 kb on - strand, within RR42_RS23100 at 517.688 kb on + strand, within RR42_RS23100 at 517.688 kb on + strand, within RR42_RS23100 at 517.689 kb on - strand, within RR42_RS23100 at 517.738 kb on + strand, within RR42_RS23100 at 518.052 kb on - strand, within RR42_RS23100 at 518.052 kb on - strand, within RR42_RS23100 at 518.052 kb on - strand, within RR42_RS23100 at 518.092 kb on + strand, within RR42_RS23100 at 518.118 kb on + strand, within RR42_RS23100 at 518.118 kb on + strand, within RR42_RS23100 at 518.119 kb on - strand, within RR42_RS23100 at 518.119 kb on - strand, within RR42_RS23100 at 518.119 kb on - strand, within RR42_RS23100 at 518.155 kb on + strand at 518.155 kb on + strand at 518.202 kb on - strand at 518.250 kb on + strand at 518.251 kb on - strand at 518.419 kb on - strand, within RR42_RS23105 at 518.419 kb on - strand, within RR42_RS23105 at 518.608 kb on + strand, within RR42_RS23105 at 518.608 kb on + strand, within RR42_RS23105 at 518.665 kb on - strand, within RR42_RS23105 at 518.665 kb on - strand, within RR42_RS23105 at 518.671 kb on - strand, within RR42_RS23105 at 518.671 kb on - strand, within RR42_RS23105 at 518.671 kb on - strand, within RR42_RS23105 at 518.704 kb on - strand, within RR42_RS23105 at 518.918 kb on + strand at 518.918 kb on + strand at 518.918 kb on + strand at 518.982 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 516,304 - -3.8 516,428 + -1.4 516,428 + +0.4 516,675 + RR42_RS23095 0.35 -0.5 516,695 - RR42_RS23095 0.38 +0.8 516,695 - RR42_RS23095 0.38 -2.4 516,715 - RR42_RS23095 0.41 -3.5 516,715 - RR42_RS23095 0.41 -0.1 516,872 - RR42_RS23095 0.61 -0.5 517,163 + -0.5 517,163 + -0.6 517,163 + +1.5 517,163 + -0.5 517,164 - +1.2 517,164 - +0.4 517,164 - +1.3 517,515 + RR42_RS23100 0.27 +1.1 517,584 + RR42_RS23100 0.34 +0.7 517,592 + RR42_RS23100 0.34 +0.7 517,592 + RR42_RS23100 0.34 +0.3 517,592 + RR42_RS23100 0.34 +1.1 517,593 - RR42_RS23100 0.35 +0.2 517,593 - RR42_RS23100 0.35 -3.7 517,593 - RR42_RS23100 0.35 +1.5 517,688 + RR42_RS23100 0.44 +0.3 517,688 + RR42_RS23100 0.44 +1.3 517,689 - RR42_RS23100 0.45 +1.9 517,738 + RR42_RS23100 0.50 +1.7 518,052 - RR42_RS23100 0.82 +0.8 518,052 - RR42_RS23100 0.82 -2.7 518,052 - RR42_RS23100 0.82 +0.4 518,092 + RR42_RS23100 0.86 -0.1 518,118 + RR42_RS23100 0.89 -2.1 518,118 + RR42_RS23100 0.89 -1.6 518,119 - RR42_RS23100 0.89 +0.7 518,119 - RR42_RS23100 0.89 -3.7 518,119 - RR42_RS23100 0.89 -1.6 518,155 + -0.4 518,155 + -0.0 518,202 - -4.4 518,250 + +0.9 518,251 - -4.0 518,419 - RR42_RS23105 0.13 -0.1 518,419 - RR42_RS23105 0.13 -0.0 518,608 + RR42_RS23105 0.54 +0.2 518,608 + RR42_RS23105 0.54 -1.9 518,665 - RR42_RS23105 0.66 +0.2 518,665 - RR42_RS23105 0.66 +1.1 518,671 - RR42_RS23105 0.68 -2.7 518,671 - RR42_RS23105 0.68 -1.6 518,671 - RR42_RS23105 0.68 +0.1 518,704 - RR42_RS23105 0.75 -0.2 518,918 + +2.5 518,918 + -0.2 518,918 + -0.1 518,982 - -2.4
Or see this region's nucleotide sequence