Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23055

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23050 and RR42_RS23055 are separated by 55 nucleotidesRR42_RS23055 and RR42_RS23060 are separated by 205 nucleotides RR42_RS23050: RR42_RS23050 - 4-oxalomesaconate tautomerase, at 505,646 to 506,725 _RS23050 RR42_RS23055: RR42_RS23055 - ABC transporter substrate-binding protein, at 506,781 to 507,728 _RS23055 RR42_RS23060: RR42_RS23060 - hypothetical protein, at 507,934 to 508,926 _RS23060 Position (kb) 506 507 508Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 505.866 kb on + strand, within RR42_RS23050at 505.867 kb on - strand, within RR42_RS23050at 505.867 kb on - strand, within RR42_RS23050at 505.867 kb on - strand, within RR42_RS23050at 505.867 kb on - strand, within RR42_RS23050at 505.867 kb on - strand, within RR42_RS23050at 505.908 kb on + strand, within RR42_RS23050at 506.023 kb on + strand, within RR42_RS23050at 506.075 kb on + strand, within RR42_RS23050at 506.076 kb on - strand, within RR42_RS23050at 506.086 kb on + strand, within RR42_RS23050at 506.221 kb on + strand, within RR42_RS23050at 506.513 kb on + strand, within RR42_RS23050at 506.514 kb on - strand, within RR42_RS23050at 506.760 kb on + strandat 506.761 kb on - strandat 506.766 kb on + strandat 506.789 kb on + strandat 506.790 kb on - strandat 506.994 kb on + strand, within RR42_RS23055at 507.023 kb on + strand, within RR42_RS23055at 507.023 kb on + strand, within RR42_RS23055at 507.024 kb on - strand, within RR42_RS23055at 507.024 kb on - strand, within RR42_RS23055at 507.084 kb on + strand, within RR42_RS23055at 507.084 kb on + strand, within RR42_RS23055at 507.161 kb on - strand, within RR42_RS23055at 507.223 kb on - strand, within RR42_RS23055at 507.268 kb on + strand, within RR42_RS23055at 507.309 kb on + strand, within RR42_RS23055at 507.413 kb on - strand, within RR42_RS23055at 507.627 kb on + strand, within RR42_RS23055at 507.627 kb on + strand, within RR42_RS23055at 507.627 kb on + strand, within RR42_RS23055at 507.628 kb on - strand, within RR42_RS23055at 507.628 kb on - strand, within RR42_RS23055at 507.973 kb on + strandat 507.974 kb on - strandat 507.974 kb on - strandat 508.044 kb on - strand, within RR42_RS23060at 508.282 kb on + strand, within RR42_RS23060at 508.294 kb on + strand, within RR42_RS23060at 508.294 kb on + strand, within RR42_RS23060at 508.363 kb on + strand, within RR42_RS23060at 508.363 kb on + strand, within RR42_RS23060at 508.396 kb on + strand, within RR42_RS23060at 508.495 kb on - strand, within RR42_RS23060at 508.642 kb on + strand, within RR42_RS23060

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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505,866 + RR42_RS23050 0.20 -1.1
505,867 - RR42_RS23050 0.20 -0.5
505,867 - RR42_RS23050 0.20 +2.8
505,867 - RR42_RS23050 0.20 -2.9
505,867 - RR42_RS23050 0.20 -0.2
505,867 - RR42_RS23050 0.20 +0.5
505,908 + RR42_RS23050 0.24 -0.5
506,023 + RR42_RS23050 0.35 -3.2
506,075 + RR42_RS23050 0.40 +0.0
506,076 - RR42_RS23050 0.40 +0.6
506,086 + RR42_RS23050 0.41 +0.4
506,221 + RR42_RS23050 0.53 +0.4
506,513 + RR42_RS23050 0.80 -1.0
506,514 - RR42_RS23050 0.80 -0.3
506,760 + +0.2
506,761 - -0.2
506,766 + +0.4
506,789 + -0.2
506,790 - +1.5
506,994 + RR42_RS23055 0.22 -3.5
507,023 + RR42_RS23055 0.26 -1.9
507,023 + RR42_RS23055 0.26 +0.1
507,024 - RR42_RS23055 0.26 -0.0
507,024 - RR42_RS23055 0.26 -1.9
507,084 + RR42_RS23055 0.32 -2.1
507,084 + RR42_RS23055 0.32 -3.3
507,161 - RR42_RS23055 0.40 -3.4
507,223 - RR42_RS23055 0.47 -1.5
507,268 + RR42_RS23055 0.51 -1.4
507,309 + RR42_RS23055 0.56 -1.2
507,413 - RR42_RS23055 0.67 -1.9
507,627 + RR42_RS23055 0.89 -1.8
507,627 + RR42_RS23055 0.89 -0.0
507,627 + RR42_RS23055 0.89 +1.1
507,628 - RR42_RS23055 0.89 -2.2
507,628 - RR42_RS23055 0.89 +0.1
507,973 + -2.4
507,974 - -0.1
507,974 - -0.1
508,044 - RR42_RS23060 0.11 -2.5
508,282 + RR42_RS23060 0.35 -0.3
508,294 + RR42_RS23060 0.36 -2.3
508,294 + RR42_RS23060 0.36 +1.2
508,363 + RR42_RS23060 0.43 -1.9
508,363 + RR42_RS23060 0.43 +0.7
508,396 + RR42_RS23060 0.47 -2.9
508,495 - RR42_RS23060 0.56 +1.4
508,642 + RR42_RS23060 0.71 -3.8

Or see this region's nucleotide sequence