Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23035 and RR42_RS23040 are separated by 398 nucleotides RR42_RS23040 and RR42_RS23045 are separated by 165 nucleotides
RR42_RS23035: RR42_RS23035 - sporulation protein, at 502,881 to 503,831
_RS23035
RR42_RS23040: RR42_RS23040 - hypothetical protein, at 504,230 to 504,514
_RS23040
RR42_RS23045: RR42_RS23045 - LysR family transcriptional regulator, at 504,680 to 505,585
_RS23045
Position (kb) 504
505 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 503.373 kb on + strand, within RR42_RS23035 at 503.598 kb on + strand, within RR42_RS23035 at 503.771 kb on + strand at 503.900 kb on + strand at 503.906 kb on + strand at 503.907 kb on - strand at 503.932 kb on + strand at 503.957 kb on + strand at 503.958 kb on - strand at 503.995 kb on - strand at 504.017 kb on + strand at 504.034 kb on + strand at 504.035 kb on - strand at 504.035 kb on - strand at 504.035 kb on - strand at 504.084 kb on - strand at 504.084 kb on - strand at 504.085 kb on + strand at 504.085 kb on + strand at 504.085 kb on + strand at 504.085 kb on + strand at 504.086 kb on - strand at 504.087 kb on + strand at 504.088 kb on - strand at 504.088 kb on - strand at 504.175 kb on + strand at 504.176 kb on - strand at 504.214 kb on - strand at 504.222 kb on + strand at 504.223 kb on - strand at 504.239 kb on - strand at 504.473 kb on + strand, within RR42_RS23040 at 504.478 kb on + strand, within RR42_RS23040 at 504.536 kb on + strand at 504.536 kb on + strand at 504.536 kb on + strand at 504.539 kb on + strand at 504.540 kb on - strand at 504.540 kb on - strand at 504.543 kb on + strand at 504.543 kb on + strand at 504.543 kb on + strand at 504.547 kb on + strand at 504.547 kb on + strand at 504.547 kb on + strand at 504.548 kb on - strand at 504.548 kb on - strand at 504.586 kb on - strand at 504.586 kb on - strand at 504.586 kb on - strand at 504.635 kb on - strand at 504.682 kb on - strand at 505.028 kb on + strand, within RR42_RS23045 at 505.028 kb on + strand, within RR42_RS23045 at 505.200 kb on - strand, within RR42_RS23045 at 505.222 kb on - strand, within RR42_RS23045 at 505.261 kb on - strand, within RR42_RS23045 at 505.261 kb on - strand, within RR42_RS23045 at 505.264 kb on - strand, within RR42_RS23045 at 505.264 kb on - strand, within RR42_RS23045
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 503,373 + RR42_RS23035 0.52 -0.0 503,598 + RR42_RS23035 0.75 +1.3 503,771 + +0.3 503,900 + -0.2 503,906 + -1.4 503,907 - +1.5 503,932 + +1.5 503,957 + -1.0 503,958 - -0.7 503,995 - +0.1 504,017 + -0.3 504,034 + -2.5 504,035 - -1.3 504,035 - +1.0 504,035 - -0.0 504,084 - +2.7 504,084 - +1.1 504,085 + -2.7 504,085 + -0.1 504,085 + -0.1 504,085 + -2.8 504,086 - +0.1 504,087 + -1.8 504,088 - -0.6 504,088 - +0.3 504,175 + -1.8 504,176 - -0.1 504,214 - -0.3 504,222 + -3.4 504,223 - -2.9 504,239 - -0.5 504,473 + RR42_RS23040 0.85 -0.6 504,478 + RR42_RS23040 0.87 +1.0 504,536 + +1.3 504,536 + +0.1 504,536 + +1.3 504,539 + +0.6 504,540 - -3.3 504,540 - +1.4 504,543 + -3.7 504,543 + -2.1 504,543 + +2.3 504,547 + -1.3 504,547 + +0.8 504,547 + -3.0 504,548 - -4.7 504,548 - -1.2 504,586 - +1.1 504,586 - +0.1 504,586 - +1.4 504,635 - -2.6 504,682 - -1.4 505,028 + RR42_RS23045 0.38 +0.9 505,028 + RR42_RS23045 0.38 +0.5 505,200 - RR42_RS23045 0.57 -3.7 505,222 - RR42_RS23045 0.60 -3.0 505,261 - RR42_RS23045 0.64 +0.4 505,261 - RR42_RS23045 0.64 -1.9 505,264 - RR42_RS23045 0.64 -3.5 505,264 - RR42_RS23045 0.64 -0.9
Or see this region's nucleotide sequence