Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23000 and RR42_RS23005 overlap by 4 nucleotides RR42_RS23005 and RR42_RS23010 are separated by 289 nucleotides RR42_RS23010 and RR42_RS23015 are separated by 163 nucleotides
RR42_RS23000: RR42_RS23000 - acylaldehyde oxidase, at 494,518 to 496,803
_RS23000
RR42_RS23005: RR42_RS23005 - hypothetical protein, at 496,800 to 497,303
_RS23005
RR42_RS23010: RR42_RS23010 - hypothetical protein, at 497,593 to 498,051
_RS23010
RR42_RS23015: RR42_RS23015 - hypothetical protein, at 498,215 to 498,757
_RS23015
Position (kb) 496
497
498 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 495.945 kb on + strand, within RR42_RS23000 at 495.945 kb on + strand, within RR42_RS23000 at 495.945 kb on + strand, within RR42_RS23000 at 495.945 kb on + strand, within RR42_RS23000 at 495.946 kb on - strand, within RR42_RS23000 at 495.946 kb on - strand, within RR42_RS23000 at 495.946 kb on - strand, within RR42_RS23000 at 495.946 kb on - strand, within RR42_RS23000 at 495.946 kb on - strand, within RR42_RS23000 at 495.946 kb on - strand, within RR42_RS23000 at 496.109 kb on + strand, within RR42_RS23000 at 496.109 kb on + strand, within RR42_RS23000 at 496.109 kb on + strand, within RR42_RS23000 at 496.110 kb on - strand, within RR42_RS23000 at 496.110 kb on - strand, within RR42_RS23000 at 496.110 kb on - strand, within RR42_RS23000 at 496.203 kb on + strand, within RR42_RS23000 at 496.204 kb on - strand, within RR42_RS23000 at 496.204 kb on - strand, within RR42_RS23000 at 496.206 kb on - strand, within RR42_RS23000 at 496.206 kb on - strand, within RR42_RS23000 at 496.606 kb on + strand at 496.606 kb on + strand at 496.606 kb on + strand at 496.606 kb on + strand at 496.606 kb on + strand at 496.606 kb on + strand at 496.606 kb on + strand at 496.606 kb on + strand at 496.607 kb on - strand at 496.607 kb on - strand at 496.607 kb on - strand at 496.607 kb on - strand at 496.607 kb on - strand at 496.607 kb on - strand at 496.682 kb on + strand at 496.682 kb on + strand at 496.682 kb on + strand at 496.892 kb on + strand, within RR42_RS23005 at 496.892 kb on + strand, within RR42_RS23005 at 496.892 kb on + strand, within RR42_RS23005 at 496.892 kb on + strand, within RR42_RS23005 at 496.893 kb on - strand, within RR42_RS23005 at 496.893 kb on - strand, within RR42_RS23005 at 496.893 kb on - strand, within RR42_RS23005 at 496.893 kb on - strand, within RR42_RS23005 at 496.894 kb on + strand, within RR42_RS23005 at 496.894 kb on + strand, within RR42_RS23005 at 496.895 kb on - strand, within RR42_RS23005 at 496.895 kb on - strand, within RR42_RS23005 at 496.895 kb on - strand, within RR42_RS23005 at 496.895 kb on - strand, within RR42_RS23005 at 496.895 kb on - strand, within RR42_RS23005 at 496.895 kb on - strand, within RR42_RS23005 at 497.009 kb on - strand, within RR42_RS23005 at 497.098 kb on + strand, within RR42_RS23005 at 497.238 kb on + strand, within RR42_RS23005 at 497.402 kb on - strand at 497.508 kb on + strand at 497.508 kb on + strand at 497.652 kb on - strand, within RR42_RS23010 at 497.652 kb on - strand, within RR42_RS23010 at 497.652 kb on - strand, within RR42_RS23010 at 497.904 kb on - strand, within RR42_RS23010 at 497.904 kb on - strand, within RR42_RS23010 at 497.904 kb on - strand, within RR42_RS23010 at 497.904 kb on - strand, within RR42_RS23010 at 497.937 kb on - strand, within RR42_RS23010 at 498.151 kb on + strand at 498.151 kb on + strand at 498.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 495,945 + RR42_RS23000 0.62 +1.8 495,945 + RR42_RS23000 0.62 +0.1 495,945 + RR42_RS23000 0.62 -0.7 495,945 + RR42_RS23000 0.62 -1.1 495,946 - RR42_RS23000 0.62 +2.1 495,946 - RR42_RS23000 0.62 +1.1 495,946 - RR42_RS23000 0.62 +1.4 495,946 - RR42_RS23000 0.62 +0.6 495,946 - RR42_RS23000 0.62 +1.8 495,946 - RR42_RS23000 0.62 +1.2 496,109 + RR42_RS23000 0.70 +0.8 496,109 + RR42_RS23000 0.70 -1.4 496,109 + RR42_RS23000 0.70 +0.7 496,110 - RR42_RS23000 0.70 -0.9 496,110 - RR42_RS23000 0.70 -0.6 496,110 - RR42_RS23000 0.70 +0.8 496,203 + RR42_RS23000 0.74 +0.3 496,204 - RR42_RS23000 0.74 -0.7 496,204 - RR42_RS23000 0.74 -1.9 496,206 - RR42_RS23000 0.74 -3.0 496,206 - RR42_RS23000 0.74 -2.9 496,606 + -0.4 496,606 + -0.7 496,606 + +0.0 496,606 + +0.7 496,606 + -0.3 496,606 + +0.4 496,606 + +0.9 496,606 + +1.0 496,607 - -3.4 496,607 - -0.4 496,607 - +0.4 496,607 - +0.8 496,607 - -2.2 496,607 - -1.4 496,682 + +0.3 496,682 + +0.6 496,682 + -1.5 496,892 + RR42_RS23005 0.18 +2.4 496,892 + RR42_RS23005 0.18 -1.1 496,892 + RR42_RS23005 0.18 +0.2 496,892 + RR42_RS23005 0.18 -0.3 496,893 - RR42_RS23005 0.18 -2.2 496,893 - RR42_RS23005 0.18 +1.6 496,893 - RR42_RS23005 0.18 -0.1 496,893 - RR42_RS23005 0.18 +1.2 496,894 + RR42_RS23005 0.19 +0.6 496,894 + RR42_RS23005 0.19 -2.6 496,895 - RR42_RS23005 0.19 -4.4 496,895 - RR42_RS23005 0.19 +0.7 496,895 - RR42_RS23005 0.19 -1.4 496,895 - RR42_RS23005 0.19 -0.7 496,895 - RR42_RS23005 0.19 -2.4 496,895 - RR42_RS23005 0.19 -3.9 497,009 - RR42_RS23005 0.41 -1.1 497,098 + RR42_RS23005 0.59 -0.5 497,238 + RR42_RS23005 0.87 -0.2 497,402 - -3.7 497,508 + -1.6 497,508 + +0.5 497,652 - RR42_RS23010 0.13 +1.5 497,652 - RR42_RS23010 0.13 +0.5 497,652 - RR42_RS23010 0.13 -3.8 497,904 - RR42_RS23010 0.68 -2.7 497,904 - RR42_RS23010 0.68 +0.4 497,904 - RR42_RS23010 0.68 +0.0 497,904 - RR42_RS23010 0.68 -0.5 497,937 - RR42_RS23010 0.75 -0.5 498,151 + +1.2 498,151 + +1.0 498,151 + -2.1
Or see this region's nucleotide sequence