Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22775 and RR42_RS22780 are separated by 20 nucleotides RR42_RS22780 and RR42_RS22785 are separated by 160 nucleotides RR42_RS22785 and RR42_RS22790 are separated by 138 nucleotides
RR42_RS22775: RR42_RS22775 - 3-isopropylmalate dehydratase, at 442,544 to 443,170
_RS22775
RR42_RS22780: RR42_RS22780 - hypothetical protein, at 443,191 to 443,745
_RS22780
RR42_RS22785: RR42_RS22785 - receptor, at 443,906 to 444,859
_RS22785
RR42_RS22790: RR42_RS22790 - MmgE/PrpD family protein, at 444,998 to 446,410
_RS22790
Position (kb) 443
444
445 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 443.828 kb on - strand at 443.840 kb on + strand at 444.008 kb on + strand, within RR42_RS22785 at 444.011 kb on - strand, within RR42_RS22785 at 444.026 kb on - strand, within RR42_RS22785 at 444.160 kb on + strand, within RR42_RS22785 at 444.160 kb on + strand, within RR42_RS22785 at 444.161 kb on - strand, within RR42_RS22785 at 444.200 kb on + strand, within RR42_RS22785 at 444.201 kb on - strand, within RR42_RS22785 at 444.279 kb on + strand, within RR42_RS22785 at 444.279 kb on + strand, within RR42_RS22785 at 444.280 kb on - strand, within RR42_RS22785 at 444.329 kb on + strand, within RR42_RS22785 at 444.444 kb on - strand, within RR42_RS22785 at 444.444 kb on - strand, within RR42_RS22785 at 444.530 kb on + strand, within RR42_RS22785 at 444.601 kb on + strand, within RR42_RS22785 at 444.804 kb on + strand at 444.804 kb on + strand at 444.846 kb on - strand at 444.908 kb on + strand at 444.909 kb on - strand at 444.918 kb on + strand at 444.918 kb on + strand at 444.918 kb on + strand at 445.292 kb on + strand, within RR42_RS22790 at 445.293 kb on - strand, within RR42_RS22790 at 445.410 kb on - strand, within RR42_RS22790 at 445.604 kb on + strand, within RR42_RS22790
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 443,828 - +1.3 443,840 + -1.2 444,008 + RR42_RS22785 0.11 +1.8 444,011 - RR42_RS22785 0.11 +1.2 444,026 - RR42_RS22785 0.13 +0.8 444,160 + RR42_RS22785 0.27 -2.5 444,160 + RR42_RS22785 0.27 +0.6 444,161 - RR42_RS22785 0.27 -3.3 444,200 + RR42_RS22785 0.31 -2.9 444,201 - RR42_RS22785 0.31 +2.5 444,279 + RR42_RS22785 0.39 -4.1 444,279 + RR42_RS22785 0.39 +1.8 444,280 - RR42_RS22785 0.39 +0.3 444,329 + RR42_RS22785 0.44 +0.2 444,444 - RR42_RS22785 0.56 -2.6 444,444 - RR42_RS22785 0.56 +0.2 444,530 + RR42_RS22785 0.65 +1.3 444,601 + RR42_RS22785 0.73 +0.1 444,804 + -1.3 444,804 + +0.9 444,846 - +1.7 444,908 + -1.1 444,909 - -2.2 444,918 + +0.4 444,918 + +1.8 444,918 + -3.0 445,292 + RR42_RS22790 0.21 -0.1 445,293 - RR42_RS22790 0.21 -1.5 445,410 - RR42_RS22790 0.29 -0.3 445,604 + RR42_RS22790 0.43 +0.5
Or see this region's nucleotide sequence