Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22715

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22710 and RR42_RS22715 are separated by 225 nucleotidesRR42_RS22715 and RR42_RS22720 overlap by 17 nucleotides RR42_RS22710: RR42_RS22710 - short-chain dehydrogenase, at 428,992 to 429,741 _RS22710 RR42_RS22715: RR42_RS22715 - AMP-binding protein, at 429,967 to 431,616 _RS22715 RR42_RS22720: RR42_RS22720 - hypothetical protein, at 431,600 to 431,977 _RS22720 Position (kb) 429 430 431 432Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 428.967 kb on - strandat 428.967 kb on - strandat 429.180 kb on - strand, within RR42_RS22710at 429.293 kb on + strand, within RR42_RS22710at 429.782 kb on + strandat 429.782 kb on + strandat 429.782 kb on + strandat 429.801 kb on + strandat 429.968 kb on + strandat 429.969 kb on - strandat 430.080 kb on - strandat 430.148 kb on + strand, within RR42_RS22715at 430.317 kb on + strand, within RR42_RS22715at 430.367 kb on + strand, within RR42_RS22715at 430.367 kb on + strand, within RR42_RS22715at 430.368 kb on - strand, within RR42_RS22715at 430.368 kb on - strand, within RR42_RS22715at 430.370 kb on + strand, within RR42_RS22715at 430.371 kb on - strand, within RR42_RS22715at 430.441 kb on - strand, within RR42_RS22715at 430.604 kb on + strand, within RR42_RS22715at 430.832 kb on + strand, within RR42_RS22715at 430.877 kb on + strand, within RR42_RS22715at 430.877 kb on + strand, within RR42_RS22715at 430.878 kb on - strand, within RR42_RS22715at 430.880 kb on + strand, within RR42_RS22715at 430.880 kb on + strand, within RR42_RS22715at 430.880 kb on + strand, within RR42_RS22715at 430.880 kb on + strand, within RR42_RS22715at 430.881 kb on - strand, within RR42_RS22715at 430.881 kb on - strand, within RR42_RS22715at 430.889 kb on + strand, within RR42_RS22715at 430.890 kb on - strand, within RR42_RS22715at 430.956 kb on + strand, within RR42_RS22715at 430.956 kb on + strand, within RR42_RS22715at 430.956 kb on + strand, within RR42_RS22715at 430.957 kb on - strand, within RR42_RS22715at 431.161 kb on + strand, within RR42_RS22715at 431.161 kb on + strand, within RR42_RS22715at 431.162 kb on - strand, within RR42_RS22715at 431.162 kb on - strand, within RR42_RS22715at 431.162 kb on - strand, within RR42_RS22715at 431.162 kb on - strand, within RR42_RS22715at 431.162 kb on - strand, within RR42_RS22715at 431.162 kb on - strand, within RR42_RS22715at 431.179 kb on + strand, within RR42_RS22715at 431.179 kb on + strand, within RR42_RS22715at 431.179 kb on + strand, within RR42_RS22715at 431.179 kb on + strand, within RR42_RS22715at 431.180 kb on - strand, within RR42_RS22715at 431.180 kb on - strand, within RR42_RS22715at 431.442 kb on + strand, within RR42_RS22715at 431.442 kb on + strand, within RR42_RS22715at 431.442 kb on + strand, within RR42_RS22715at 431.443 kb on - strand, within RR42_RS22715at 431.443 kb on - strand, within RR42_RS22715at 431.443 kb on - strand, within RR42_RS22715at 431.443 kb on - strand, within RR42_RS22715at 431.444 kb on + strand, within RR42_RS22715at 431.444 kb on + strand, within RR42_RS22715at 431.445 kb on - strand, within RR42_RS22715at 431.637 kb on + strandat 431.638 kb on - strand, within RR42_RS22720at 432.013 kb on + strandat 432.031 kb on + strandat 432.034 kb on + strandat 432.034 kb on + strandat 432.034 kb on + strandat 432.034 kb on + strandat 432.034 kb on + strandat 432.034 kb on + strandat 432.034 kb on + strandat 432.034 kb on + strandat 432.035 kb on - strandat 432.035 kb on - strandat 432.035 kb on - strandat 432.035 kb on - strandat 432.035 kb on - strandat 432.046 kb on + strandat 432.095 kb on - strandat 432.095 kb on - strandat 432.125 kb on - strandat 432.125 kb on - strandat 432.148 kb on + strandat 432.148 kb on + strandat 432.149 kb on - strandat 432.193 kb on + strandat 432.194 kb on - strandat 432.300 kb on - strandat 432.494 kb on + strandat 432.495 kb on - strandat 432.495 kb on - strandat 432.536 kb on + strandat 432.536 kb on + strandat 432.613 kb on + strandat 432.614 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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428,967 - -2.0
428,967 - -3.9
429,180 - RR42_RS22710 0.25 -3.4
429,293 + RR42_RS22710 0.40 -1.5
429,782 + -1.7
429,782 + -2.8
429,782 + -0.8
429,801 + +0.6
429,968 + +0.4
429,969 - -4.7
430,080 - -0.6
430,148 + RR42_RS22715 0.11 -0.7
430,317 + RR42_RS22715 0.21 -2.7
430,367 + RR42_RS22715 0.24 +2.9
430,367 + RR42_RS22715 0.24 -3.5
430,368 - RR42_RS22715 0.24 -2.6
430,368 - RR42_RS22715 0.24 -1.7
430,370 + RR42_RS22715 0.24 +1.0
430,371 - RR42_RS22715 0.24 -0.5
430,441 - RR42_RS22715 0.29 +0.0
430,604 + RR42_RS22715 0.39 +1.5
430,832 + RR42_RS22715 0.52 -2.3
430,877 + RR42_RS22715 0.55 +1.3
430,877 + RR42_RS22715 0.55 -1.9
430,878 - RR42_RS22715 0.55 +1.8
430,880 + RR42_RS22715 0.55 -2.2
430,880 + RR42_RS22715 0.55 +0.6
430,880 + RR42_RS22715 0.55 -2.0
430,880 + RR42_RS22715 0.55 -1.7
430,881 - RR42_RS22715 0.55 +1.7
430,881 - RR42_RS22715 0.55 +0.9
430,889 + RR42_RS22715 0.56 -1.5
430,890 - RR42_RS22715 0.56 -0.0
430,956 + RR42_RS22715 0.60 +1.5
430,956 + RR42_RS22715 0.60 +1.6
430,956 + RR42_RS22715 0.60 +0.4
430,957 - RR42_RS22715 0.60 +0.4
431,161 + RR42_RS22715 0.72 -3.0
431,161 + RR42_RS22715 0.72 -3.0
431,162 - RR42_RS22715 0.72 -0.3
431,162 - RR42_RS22715 0.72 +1.8
431,162 - RR42_RS22715 0.72 -0.3
431,162 - RR42_RS22715 0.72 +0.5
431,162 - RR42_RS22715 0.72 +2.8
431,162 - RR42_RS22715 0.72 +2.0
431,179 + RR42_RS22715 0.73 +1.4
431,179 + RR42_RS22715 0.73 -0.7
431,179 + RR42_RS22715 0.73 -1.7
431,179 + RR42_RS22715 0.73 +0.7
431,180 - RR42_RS22715 0.74 +1.6
431,180 - RR42_RS22715 0.74 +1.5
431,442 + RR42_RS22715 0.89 -2.5
431,442 + RR42_RS22715 0.89 +0.1
431,442 + RR42_RS22715 0.89 +0.7
431,443 - RR42_RS22715 0.89 -0.9
431,443 - RR42_RS22715 0.89 -2.4
431,443 - RR42_RS22715 0.89 +0.6
431,443 - RR42_RS22715 0.89 -0.7
431,444 + RR42_RS22715 0.90 -0.1
431,444 + RR42_RS22715 0.90 +1.2
431,445 - RR42_RS22715 0.90 -1.5
431,637 + +1.2
431,638 - RR42_RS22720 0.10 -1.1
432,013 + -2.8
432,031 + -0.1
432,034 + -0.6
432,034 + +0.4
432,034 + -0.1
432,034 + +4.7
432,034 + -2.9
432,034 + +1.1
432,034 + -1.9
432,034 + +1.7
432,035 - +2.1
432,035 - -0.6
432,035 - -1.6
432,035 - -1.3
432,035 - -0.1
432,046 + -0.6
432,095 - -0.5
432,095 - +1.1
432,125 - +1.1
432,125 - +0.8
432,148 + -4.0
432,148 + +0.6
432,149 - -0.2
432,193 + +1.3
432,194 - -3.1
432,300 - -1.7
432,494 + -4.0
432,495 - -1.0
432,495 - +1.9
432,536 + -4.9
432,536 + +2.0
432,613 + -0.3
432,614 - +1.0

Or see this region's nucleotide sequence