Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22690

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22685 and RR42_RS22690 are separated by 44 nucleotidesRR42_RS22690 and RR42_RS22695 are separated by 316 nucleotidesRR42_RS22695 and RR42_RS22700 are separated by 193 nucleotides RR42_RS22685: RR42_RS22685 - ABC transporter substrate-binding protein, at 424,385 to 425,356 _RS22685 RR42_RS22690: RR42_RS22690 - CoA-transferase, at 425,401 to 426,582 _RS22690 RR42_RS22695: RR42_RS22695 - chemotaxis protein, at 426,899 to 427,324 _RS22695 RR42_RS22700: RR42_RS22700 - phasin, at 427,518 to 428,075 _RS22700 Position (kb) 425 426 427Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 424.408 kb on + strandat 424.648 kb on - strand, within RR42_RS22685at 424.648 kb on - strand, within RR42_RS22685at 424.667 kb on + strand, within RR42_RS22685at 424.667 kb on + strand, within RR42_RS22685at 424.809 kb on + strand, within RR42_RS22685at 424.809 kb on + strand, within RR42_RS22685at 424.810 kb on - strand, within RR42_RS22685at 424.810 kb on - strand, within RR42_RS22685at 424.902 kb on + strand, within RR42_RS22685at 424.903 kb on - strand, within RR42_RS22685at 424.903 kb on - strand, within RR42_RS22685at 424.903 kb on - strand, within RR42_RS22685at 425.034 kb on + strand, within RR42_RS22685at 425.034 kb on + strand, within RR42_RS22685at 425.034 kb on + strand, within RR42_RS22685at 425.128 kb on - strand, within RR42_RS22685at 425.250 kb on + strand, within RR42_RS22685at 425.283 kb on + strandat 425.382 kb on - strandat 425.400 kb on - strandat 425.402 kb on + strandat 425.403 kb on - strandat 425.403 kb on - strandat 425.412 kb on + strandat 425.714 kb on + strand, within RR42_RS22690at 425.714 kb on + strand, within RR42_RS22690at 425.888 kb on + strand, within RR42_RS22690at 425.889 kb on - strand, within RR42_RS22690at 426.008 kb on + strand, within RR42_RS22690at 426.008 kb on + strand, within RR42_RS22690at 426.008 kb on + strand, within RR42_RS22690at 426.008 kb on + strand, within RR42_RS22690at 426.008 kb on + strand, within RR42_RS22690at 426.008 kb on + strand, within RR42_RS22690at 426.008 kb on + strand, within RR42_RS22690at 426.009 kb on - strand, within RR42_RS22690at 426.009 kb on - strand, within RR42_RS22690at 426.009 kb on - strand, within RR42_RS22690at 426.009 kb on - strand, within RR42_RS22690at 426.009 kb on - strand, within RR42_RS22690at 426.009 kb on - strand, within RR42_RS22690at 426.009 kb on - strand, within RR42_RS22690at 426.009 kb on - strand, within RR42_RS22690at 426.089 kb on + strand, within RR42_RS22690at 426.090 kb on - strand, within RR42_RS22690at 426.122 kb on + strand, within RR42_RS22690at 426.122 kb on + strand, within RR42_RS22690at 426.123 kb on - strand, within RR42_RS22690at 426.123 kb on - strand, within RR42_RS22690at 426.123 kb on - strand, within RR42_RS22690at 426.123 kb on - strand, within RR42_RS22690at 426.182 kb on + strand, within RR42_RS22690at 426.218 kb on + strand, within RR42_RS22690at 426.254 kb on + strand, within RR42_RS22690at 426.255 kb on - strand, within RR42_RS22690at 426.255 kb on - strand, within RR42_RS22690at 426.324 kb on - strand, within RR42_RS22690at 426.368 kb on + strand, within RR42_RS22690at 426.425 kb on + strand, within RR42_RS22690at 426.425 kb on + strand, within RR42_RS22690at 426.426 kb on - strand, within RR42_RS22690at 426.472 kb on + strandat 426.472 kb on + strandat 426.472 kb on + strandat 426.472 kb on + strandat 426.473 kb on - strandat 426.532 kb on + strandat 426.533 kb on - strandat 426.653 kb on + strandat 426.653 kb on + strandat 426.654 kb on - strandat 426.654 kb on - strandat 426.792 kb on - strandat 426.950 kb on + strand, within RR42_RS22695at 426.951 kb on - strand, within RR42_RS22695at 426.970 kb on + strand, within RR42_RS22695at 426.971 kb on - strand, within RR42_RS22695at 427.204 kb on + strand, within RR42_RS22695at 427.204 kb on + strand, within RR42_RS22695at 427.322 kb on + strandat 427.383 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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424,408 + +0.6
424,648 - RR42_RS22685 0.27 -0.9
424,648 - RR42_RS22685 0.27 -1.5
424,667 + RR42_RS22685 0.29 -2.1
424,667 + RR42_RS22685 0.29 -3.2
424,809 + RR42_RS22685 0.44 -3.9
424,809 + RR42_RS22685 0.44 -0.1
424,810 - RR42_RS22685 0.44 +1.6
424,810 - RR42_RS22685 0.44 +1.4
424,902 + RR42_RS22685 0.53 -2.7
424,903 - RR42_RS22685 0.53 -0.0
424,903 - RR42_RS22685 0.53 +2.4
424,903 - RR42_RS22685 0.53 -0.7
425,034 + RR42_RS22685 0.67 -1.8
425,034 + RR42_RS22685 0.67 -2.0
425,034 + RR42_RS22685 0.67 +1.1
425,128 - RR42_RS22685 0.76 +1.1
425,250 + RR42_RS22685 0.89 -2.0
425,283 + +0.6
425,382 - -3.6
425,400 - -1.8
425,402 + -2.9
425,403 - -2.3
425,403 - +0.9
425,412 + +0.8
425,714 + RR42_RS22690 0.26 -3.0
425,714 + RR42_RS22690 0.26 -0.7
425,888 + RR42_RS22690 0.41 -0.5
425,889 - RR42_RS22690 0.41 -3.0
426,008 + RR42_RS22690 0.51 +0.3
426,008 + RR42_RS22690 0.51 +0.0
426,008 + RR42_RS22690 0.51 -0.8
426,008 + RR42_RS22690 0.51 +1.8
426,008 + RR42_RS22690 0.51 +2.5
426,008 + RR42_RS22690 0.51 -4.1
426,008 + RR42_RS22690 0.51 +0.5
426,009 - RR42_RS22690 0.51 -0.9
426,009 - RR42_RS22690 0.51 -2.4
426,009 - RR42_RS22690 0.51 -0.3
426,009 - RR42_RS22690 0.51 +1.2
426,009 - RR42_RS22690 0.51 -0.6
426,009 - RR42_RS22690 0.51 -3.0
426,009 - RR42_RS22690 0.51 -0.4
426,009 - RR42_RS22690 0.51 -1.0
426,089 + RR42_RS22690 0.58 +0.3
426,090 - RR42_RS22690 0.58 +1.4
426,122 + RR42_RS22690 0.61 -2.1
426,122 + RR42_RS22690 0.61 -3.4
426,123 - RR42_RS22690 0.61 +0.5
426,123 - RR42_RS22690 0.61 -0.1
426,123 - RR42_RS22690 0.61 +0.6
426,123 - RR42_RS22690 0.61 -2.1
426,182 + RR42_RS22690 0.66 -0.3
426,218 + RR42_RS22690 0.69 -1.8
426,254 + RR42_RS22690 0.72 -1.6
426,255 - RR42_RS22690 0.72 -1.2
426,255 - RR42_RS22690 0.72 -0.6
426,324 - RR42_RS22690 0.78 +0.2
426,368 + RR42_RS22690 0.82 -2.9
426,425 + RR42_RS22690 0.87 +2.0
426,425 + RR42_RS22690 0.87 -0.1
426,426 - RR42_RS22690 0.87 -0.1
426,472 + -0.0
426,472 + +1.1
426,472 + +0.5
426,472 + -0.5
426,473 - +1.6
426,532 + +0.5
426,533 - +1.3
426,653 + +0.1
426,653 + +0.5
426,654 - -2.8
426,654 - +0.9
426,792 - +2.4
426,950 + RR42_RS22695 0.12 -4.1
426,951 - RR42_RS22695 0.12 +3.0
426,970 + RR42_RS22695 0.17 +0.7
426,971 - RR42_RS22695 0.17 -0.1
427,204 + RR42_RS22695 0.72 +0.1
427,204 + RR42_RS22695 0.72 +0.6
427,322 + +0.6
427,383 + -1.2

Or see this region's nucleotide sequence