Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22645 and RR42_RS22650 are separated by 230 nucleotides RR42_RS22650 and RR42_RS22655 are separated by 75 nucleotides
RR42_RS22645: RR42_RS22645 - GntR family transcriptional regulator, at 414,308 to 415,360
_RS22645
RR42_RS22650: RR42_RS22650 - ABC transporter substrate-binding protein, at 415,591 to 416,580
_RS22650
RR42_RS22655: RR42_RS22655 - mandelate racemase, at 416,656 to 417,813
_RS22655
Position (kb) 415
416
417 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 414.782 kb on - strand, within RR42_RS22645 at 414.782 kb on - strand, within RR42_RS22645 at 414.782 kb on - strand, within RR42_RS22645 at 414.869 kb on + strand, within RR42_RS22645 at 415.388 kb on + strand at 415.527 kb on + strand at 415.527 kb on + strand at 415.687 kb on + strand at 415.688 kb on - strand at 415.870 kb on + strand, within RR42_RS22650 at 415.871 kb on - strand, within RR42_RS22650 at 415.912 kb on + strand, within RR42_RS22650 at 415.913 kb on - strand, within RR42_RS22650 at 415.921 kb on + strand, within RR42_RS22650 at 415.921 kb on + strand, within RR42_RS22650 at 415.922 kb on - strand, within RR42_RS22650 at 415.922 kb on - strand, within RR42_RS22650 at 415.922 kb on - strand, within RR42_RS22650 at 415.922 kb on - strand, within RR42_RS22650 at 416.065 kb on + strand, within RR42_RS22650 at 416.065 kb on + strand, within RR42_RS22650 at 416.158 kb on + strand, within RR42_RS22650 at 416.158 kb on + strand, within RR42_RS22650 at 416.159 kb on - strand, within RR42_RS22650 at 416.277 kb on - strand, within RR42_RS22650 at 416.302 kb on + strand, within RR42_RS22650 at 416.386 kb on - strand, within RR42_RS22650 at 416.386 kb on - strand, within RR42_RS22650 at 416.531 kb on + strand at 416.579 kb on - strand at 416.725 kb on + strand at 416.854 kb on + strand, within RR42_RS22655 at 416.854 kb on + strand, within RR42_RS22655 at 417.109 kb on + strand at 417.109 kb on + strand, within RR42_RS22655 at 417.109 kb on + strand, within RR42_RS22655 at 417.109 kb on + strand, within RR42_RS22655 at 417.109 kb on + strand, within RR42_RS22655 at 417.110 kb on - strand, within RR42_RS22655 at 417.136 kb on - strand, within RR42_RS22655 at 417.136 kb on - strand, within RR42_RS22655 at 417.460 kb on - strand, within RR42_RS22655
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 414,782 - RR42_RS22645 0.45 -0.6 414,782 - RR42_RS22645 0.45 -2.7 414,782 - RR42_RS22645 0.45 -2.1 414,869 + RR42_RS22645 0.53 -2.9 415,388 + +0.2 415,527 + -0.2 415,527 + +0.4 415,687 + -0.7 415,688 - -3.0 415,870 + RR42_RS22650 0.28 -2.9 415,871 - RR42_RS22650 0.28 -4.2 415,912 + RR42_RS22650 0.32 +0.8 415,913 - RR42_RS22650 0.33 +1.1 415,921 + RR42_RS22650 0.33 -0.6 415,921 + RR42_RS22650 0.33 +0.8 415,922 - RR42_RS22650 0.33 +0.5 415,922 - RR42_RS22650 0.33 +0.5 415,922 - RR42_RS22650 0.33 -0.6 415,922 - RR42_RS22650 0.33 +0.2 416,065 + RR42_RS22650 0.48 +2.1 416,065 + RR42_RS22650 0.48 +0.6 416,158 + RR42_RS22650 0.57 +1.5 416,158 + RR42_RS22650 0.57 +2.1 416,159 - RR42_RS22650 0.57 +0.6 416,277 - RR42_RS22650 0.69 -2.5 416,302 + RR42_RS22650 0.72 -2.7 416,386 - RR42_RS22650 0.80 +1.0 416,386 - RR42_RS22650 0.80 +1.5 416,531 + -0.2 416,579 - -1.8 416,725 + +0.1 416,854 + RR42_RS22655 0.17 +0.6 416,854 + RR42_RS22655 0.17 -0.0 417,109 + +2.1 417,109 + RR42_RS22655 0.39 +2.6 417,109 + RR42_RS22655 0.39 -0.6 417,109 + RR42_RS22655 0.39 +0.9 417,109 + RR42_RS22655 0.39 +2.0 417,110 - RR42_RS22655 0.39 +1.2 417,136 - RR42_RS22655 0.41 +1.4 417,136 - RR42_RS22655 0.41 +0.0 417,460 - RR42_RS22655 0.69 -0.9
Or see this region's nucleotide sequence