Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22640 and RR42_RS22645 are separated by 344 nucleotides RR42_RS22645 and RR42_RS22650 are separated by 230 nucleotides
RR42_RS22640: RR42_RS22640 - CAAX amino protease, at 413,175 to 413,963
_RS22640
RR42_RS22645: RR42_RS22645 - GntR family transcriptional regulator, at 414,308 to 415,360
_RS22645
RR42_RS22650: RR42_RS22650 - ABC transporter substrate-binding protein, at 415,591 to 416,580
_RS22650
Position (kb) 414
415
416 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 413.392 kb on + strand, within RR42_RS22640 at 413.392 kb on + strand, within RR42_RS22640 at 413.393 kb on - strand, within RR42_RS22640 at 413.440 kb on + strand, within RR42_RS22640 at 413.441 kb on - strand, within RR42_RS22640 at 413.441 kb on - strand, within RR42_RS22640 at 413.480 kb on - strand, within RR42_RS22640 at 413.780 kb on - strand, within RR42_RS22640 at 413.780 kb on - strand, within RR42_RS22640 at 413.824 kb on + strand, within RR42_RS22640 at 413.908 kb on - strand at 414.010 kb on + strand at 414.010 kb on + strand at 414.033 kb on - strand at 414.074 kb on + strand at 414.172 kb on + strand at 414.203 kb on - strand at 414.223 kb on - strand at 414.381 kb on + strand at 414.381 kb on + strand at 414.381 kb on + strand at 414.381 kb on + strand at 414.382 kb on - strand at 414.476 kb on + strand, within RR42_RS22645 at 414.476 kb on + strand, within RR42_RS22645 at 414.782 kb on - strand, within RR42_RS22645 at 414.782 kb on - strand, within RR42_RS22645 at 414.782 kb on - strand, within RR42_RS22645 at 414.869 kb on + strand, within RR42_RS22645 at 415.388 kb on + strand at 415.527 kb on + strand at 415.527 kb on + strand at 415.687 kb on + strand at 415.688 kb on - strand at 415.870 kb on + strand, within RR42_RS22650 at 415.871 kb on - strand, within RR42_RS22650 at 415.912 kb on + strand, within RR42_RS22650 at 415.913 kb on - strand, within RR42_RS22650 at 415.921 kb on + strand, within RR42_RS22650 at 415.921 kb on + strand, within RR42_RS22650 at 415.922 kb on - strand, within RR42_RS22650 at 415.922 kb on - strand, within RR42_RS22650 at 415.922 kb on - strand, within RR42_RS22650 at 415.922 kb on - strand, within RR42_RS22650 at 416.065 kb on + strand, within RR42_RS22650 at 416.065 kb on + strand, within RR42_RS22650 at 416.158 kb on + strand, within RR42_RS22650 at 416.158 kb on + strand, within RR42_RS22650 at 416.159 kb on - strand, within RR42_RS22650 at 416.277 kb on - strand, within RR42_RS22650 at 416.302 kb on + strand, within RR42_RS22650
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 413,392 + RR42_RS22640 0.28 -1.2 413,392 + RR42_RS22640 0.28 +1.2 413,393 - RR42_RS22640 0.28 -3.3 413,440 + RR42_RS22640 0.34 -1.0 413,441 - RR42_RS22640 0.34 -3.8 413,441 - RR42_RS22640 0.34 -1.3 413,480 - RR42_RS22640 0.39 +1.0 413,780 - RR42_RS22640 0.77 -1.9 413,780 - RR42_RS22640 0.77 -2.6 413,824 + RR42_RS22640 0.82 -1.1 413,908 - +0.5 414,010 + -1.8 414,010 + -1.8 414,033 - +0.2 414,074 + +1.7 414,172 + +1.5 414,203 - +2.1 414,223 - +1.1 414,381 + -4.2 414,381 + +1.0 414,381 + -1.5 414,381 + +1.4 414,382 - -1.9 414,476 + RR42_RS22645 0.16 +1.3 414,476 + RR42_RS22645 0.16 -0.3 414,782 - RR42_RS22645 0.45 -0.6 414,782 - RR42_RS22645 0.45 -2.7 414,782 - RR42_RS22645 0.45 -2.1 414,869 + RR42_RS22645 0.53 -2.9 415,388 + +0.2 415,527 + -0.2 415,527 + +0.4 415,687 + -0.7 415,688 - -3.0 415,870 + RR42_RS22650 0.28 -2.9 415,871 - RR42_RS22650 0.28 -4.2 415,912 + RR42_RS22650 0.32 +0.8 415,913 - RR42_RS22650 0.33 +1.1 415,921 + RR42_RS22650 0.33 -0.6 415,921 + RR42_RS22650 0.33 +0.8 415,922 - RR42_RS22650 0.33 +0.5 415,922 - RR42_RS22650 0.33 +0.5 415,922 - RR42_RS22650 0.33 -0.6 415,922 - RR42_RS22650 0.33 +0.2 416,065 + RR42_RS22650 0.48 +2.1 416,065 + RR42_RS22650 0.48 +0.6 416,158 + RR42_RS22650 0.57 +1.5 416,158 + RR42_RS22650 0.57 +2.1 416,159 - RR42_RS22650 0.57 +0.6 416,277 - RR42_RS22650 0.69 -2.5 416,302 + RR42_RS22650 0.72 -2.7
Or see this region's nucleotide sequence