Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22630

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22625 and RR42_RS22630 are separated by 71 nucleotidesRR42_RS22630 and RR42_RS22635 are separated by 207 nucleotides RR42_RS22625: RR42_RS22625 - thiolase, at 408,459 to 409,637 _RS22625 RR42_RS22630: RR42_RS22630 - 3-hydroxyacyl-CoA dehydrogenase, at 409,709 to 411,799 _RS22630 RR42_RS22635: RR42_RS22635 - membrane protein, at 412,007 to 413,080 _RS22635 Position (kb) 409 410 411 412Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 408.793 kb on + strand, within RR42_RS22625at 408.793 kb on + strand, within RR42_RS22625at 408.794 kb on - strand, within RR42_RS22625at 408.880 kb on - strand, within RR42_RS22625at 408.891 kb on + strand, within RR42_RS22625at 408.892 kb on - strand, within RR42_RS22625at 408.919 kb on - strand, within RR42_RS22625at 409.183 kb on - strand, within RR42_RS22625at 409.183 kb on - strand, within RR42_RS22625at 409.326 kb on + strand, within RR42_RS22625at 409.488 kb on + strand, within RR42_RS22625at 409.488 kb on + strand, within RR42_RS22625at 409.488 kb on + strand, within RR42_RS22625at 409.489 kb on - strand, within RR42_RS22625at 409.489 kb on - strand, within RR42_RS22625at 409.610 kb on + strandat 409.611 kb on - strandat 409.651 kb on + strandat 410.726 kb on + strand, within RR42_RS22630at 410.930 kb on - strand, within RR42_RS22630at 411.164 kb on + strand, within RR42_RS22630at 411.286 kb on + strand, within RR42_RS22630at 411.286 kb on + strand, within RR42_RS22630at 411.287 kb on - strand, within RR42_RS22630at 411.404 kb on + strand, within RR42_RS22630at 411.407 kb on + strand, within RR42_RS22630at 411.614 kb on + strandat 411.614 kb on + strandat 411.614 kb on + strandat 411.867 kb on - strandat 411.867 kb on - strandat 411.872 kb on - strandat 412.341 kb on - strand, within RR42_RS22635at 412.552 kb on + strand, within RR42_RS22635at 412.552 kb on + strand, within RR42_RS22635at 412.553 kb on - strand, within RR42_RS22635at 412.562 kb on + strand, within RR42_RS22635

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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408,793 + RR42_RS22625 0.28 -0.5
408,793 + RR42_RS22625 0.28 +0.5
408,794 - RR42_RS22625 0.28 +3.5
408,880 - RR42_RS22625 0.36 -2.4
408,891 + RR42_RS22625 0.37 -3.0
408,892 - RR42_RS22625 0.37 -0.9
408,919 - RR42_RS22625 0.39 +0.6
409,183 - RR42_RS22625 0.61 +0.7
409,183 - RR42_RS22625 0.61 -1.6
409,326 + RR42_RS22625 0.74 +0.1
409,488 + RR42_RS22625 0.87 -3.6
409,488 + RR42_RS22625 0.87 +0.9
409,488 + RR42_RS22625 0.87 +0.6
409,489 - RR42_RS22625 0.87 -0.1
409,489 - RR42_RS22625 0.87 +1.1
409,610 + -2.5
409,611 - -0.9
409,651 + +0.6
410,726 + RR42_RS22630 0.49 -1.9
410,930 - RR42_RS22630 0.58 -0.5
411,164 + RR42_RS22630 0.70 -2.7
411,286 + RR42_RS22630 0.75 +0.5
411,286 + RR42_RS22630 0.75 -3.6
411,287 - RR42_RS22630 0.75 -2.2
411,404 + RR42_RS22630 0.81 -0.1
411,407 + RR42_RS22630 0.81 -1.5
411,614 + -0.6
411,614 + +1.5
411,614 + +0.3
411,867 - +0.0
411,867 - +0.9
411,872 - -0.8
412,341 - RR42_RS22635 0.31 -1.7
412,552 + RR42_RS22635 0.51 -2.3
412,552 + RR42_RS22635 0.51 -4.0
412,553 - RR42_RS22635 0.51 +1.5
412,562 + RR42_RS22635 0.52 -1.5

Or see this region's nucleotide sequence