Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22505 and RR42_RS22510 are separated by 6 nucleotides RR42_RS22510 and RR42_RS22515 are separated by 105 nucleotides
RR42_RS22505: RR42_RS22505 - LysR family transcriptional regulator, at 385,887 to 386,924
_RS22505
RR42_RS22510: RR42_RS22510 - ferredoxin, at 386,931 to 387,890
_RS22510
RR42_RS22515: RR42_RS22515 - branched-chain amino acid ABC transporter substrate-binding protein, at 387,996 to 389,132
_RS22515
Position (kb) 386
387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 385.987 kb on - strand at 386.091 kb on + strand, within RR42_RS22505 at 386.092 kb on - strand, within RR42_RS22505 at 386.302 kb on - strand, within RR42_RS22505 at 386.310 kb on + strand, within RR42_RS22505 at 386.403 kb on + strand, within RR42_RS22505 at 386.403 kb on + strand, within RR42_RS22505 at 386.567 kb on - strand, within RR42_RS22505 at 386.683 kb on - strand, within RR42_RS22505 at 386.683 kb on - strand, within RR42_RS22505 at 386.947 kb on + strand at 386.948 kb on - strand at 387.162 kb on + strand, within RR42_RS22510 at 387.163 kb on - strand, within RR42_RS22510 at 387.166 kb on + strand, within RR42_RS22510 at 387.339 kb on + strand, within RR42_RS22510 at 387.339 kb on + strand, within RR42_RS22510 at 387.378 kb on - strand, within RR42_RS22510 at 387.489 kb on + strand, within RR42_RS22510 at 387.798 kb on + strand at 387.799 kb on - strand at 388.053 kb on - strand at 388.430 kb on + strand, within RR42_RS22515 at 388.431 kb on - strand, within RR42_RS22515 at 388.431 kb on - strand, within RR42_RS22515 at 388.557 kb on + strand, within RR42_RS22515 at 388.558 kb on - strand, within RR42_RS22515 at 388.686 kb on + strand, within RR42_RS22515 at 388.686 kb on + strand, within RR42_RS22515 at 388.687 kb on - strand, within RR42_RS22515 at 388.701 kb on + strand, within RR42_RS22515 at 388.711 kb on - strand, within RR42_RS22515 at 388.855 kb on - strand, within RR42_RS22515 at 388.867 kb on - strand, within RR42_RS22515 at 388.875 kb on - strand, within RR42_RS22515
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 385,987 - +0.6 386,091 + RR42_RS22505 0.20 -2.9 386,092 - RR42_RS22505 0.20 +3.4 386,302 - RR42_RS22505 0.40 +0.3 386,310 + RR42_RS22505 0.41 +1.6 386,403 + RR42_RS22505 0.50 -0.5 386,403 + RR42_RS22505 0.50 -0.4 386,567 - RR42_RS22505 0.66 -0.5 386,683 - RR42_RS22505 0.77 +0.3 386,683 - RR42_RS22505 0.77 +0.0 386,947 + +0.4 386,948 - -0.3 387,162 + RR42_RS22510 0.24 -0.4 387,163 - RR42_RS22510 0.24 +0.5 387,166 + RR42_RS22510 0.24 -0.4 387,339 + RR42_RS22510 0.42 +0.0 387,339 + RR42_RS22510 0.42 -0.9 387,378 - RR42_RS22510 0.47 -2.3 387,489 + RR42_RS22510 0.58 -0.5 387,798 + +0.4 387,799 - +0.8 388,053 - -0.7 388,430 + RR42_RS22515 0.38 +0.8 388,431 - RR42_RS22515 0.38 -0.6 388,431 - RR42_RS22515 0.38 +0.5 388,557 + RR42_RS22515 0.49 -3.2 388,558 - RR42_RS22515 0.49 +0.6 388,686 + RR42_RS22515 0.61 +0.2 388,686 + RR42_RS22515 0.61 +1.0 388,687 - RR42_RS22515 0.61 +0.3 388,701 + RR42_RS22515 0.62 +0.2 388,711 - RR42_RS22515 0.63 +0.4 388,855 - RR42_RS22515 0.76 +3.1 388,867 - RR42_RS22515 0.77 -0.7 388,875 - RR42_RS22515 0.77 -3.3
Or see this region's nucleotide sequence