Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22325 and RR42_RS22330 are separated by 31 nucleotides RR42_RS22330 and RR42_RS22335 are separated by 414 nucleotides RR42_RS22335 and RR42_RS22340 are separated by 32 nucleotides
RR42_RS22325: RR42_RS22325 - hypothetical protein, at 349,168 to 350,265
_RS22325
RR42_RS22330: RR42_RS22330 - ester cyclase, at 350,297 to 350,800
_RS22330
RR42_RS22335: RR42_RS22335 - hemagglutinin, at 351,215 to 352,492
_RS22335
RR42_RS22340: RR42_RS22340 - peptidase, at 352,525 to 353,808
_RS22340
Position (kb) 351
352
353 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 350.299 kb on - strand at 350.622 kb on + strand, within RR42_RS22330 at 350.622 kb on + strand, within RR42_RS22330 at 350.623 kb on - strand, within RR42_RS22330 at 350.623 kb on - strand, within RR42_RS22330 at 350.679 kb on + strand, within RR42_RS22330 at 350.679 kb on + strand, within RR42_RS22330 at 350.871 kb on + strand at 350.872 kb on - strand at 351.001 kb on - strand at 351.005 kb on - strand at 351.064 kb on + strand at 351.155 kb on + strand at 351.156 kb on - strand at 351.159 kb on + strand at 351.159 kb on + strand at 351.230 kb on + strand at 351.241 kb on + strand at 351.242 kb on - strand at 351.506 kb on - strand, within RR42_RS22335 at 351.559 kb on + strand, within RR42_RS22335 at 351.559 kb on + strand, within RR42_RS22335 at 351.559 kb on + strand, within RR42_RS22335 at 351.559 kb on + strand, within RR42_RS22335 at 352.031 kb on - strand, within RR42_RS22335 at 352.031 kb on - strand, within RR42_RS22335 at 352.032 kb on - strand, within RR42_RS22335 at 352.150 kb on + strand, within RR42_RS22335 at 352.237 kb on + strand, within RR42_RS22335 at 352.237 kb on + strand, within RR42_RS22335 at 352.238 kb on - strand, within RR42_RS22335 at 352.494 kb on - strand at 352.524 kb on - strand at 352.524 kb on - strand at 352.590 kb on - strand at 352.592 kb on + strand at 352.592 kb on + strand at 352.592 kb on + strand at 352.593 kb on - strand at 352.593 kb on - strand at 352.808 kb on + strand, within RR42_RS22340 at 352.828 kb on + strand, within RR42_RS22340 at 353.088 kb on + strand, within RR42_RS22340 at 353.089 kb on - strand, within RR42_RS22340 at 353.089 kb on - strand, within RR42_RS22340 at 353.307 kb on + strand, within RR42_RS22340 at 353.307 kb on + strand, within RR42_RS22340 at 353.307 kb on + strand, within RR42_RS22340 at 353.307 kb on + strand, within RR42_RS22340 at 353.307 kb on + strand, within RR42_RS22340 at 353.307 kb on + strand, within RR42_RS22340 at 353.307 kb on + strand, within RR42_RS22340 at 353.308 kb on - strand, within RR42_RS22340 at 353.308 kb on - strand, within RR42_RS22340 at 353.308 kb on - strand, within RR42_RS22340 at 353.308 kb on - strand, within RR42_RS22340 at 353.308 kb on - strand, within RR42_RS22340 at 353.308 kb on - strand, within RR42_RS22340 at 353.308 kb on - strand, within RR42_RS22340 at 353.308 kb on - strand, within RR42_RS22340 at 353.376 kb on - strand, within RR42_RS22340 at 353.475 kb on - strand, within RR42_RS22340
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 350,299 - -0.8 350,622 + RR42_RS22330 0.64 +0.9 350,622 + RR42_RS22330 0.64 +1.3 350,623 - RR42_RS22330 0.65 -0.0 350,623 - RR42_RS22330 0.65 -0.0 350,679 + RR42_RS22330 0.76 -0.8 350,679 + RR42_RS22330 0.76 -0.2 350,871 + -0.2 350,872 - +0.9 351,001 - -0.5 351,005 - -1.1 351,064 + -4.3 351,155 + +1.8 351,156 - -1.6 351,159 + -3.8 351,159 + +1.3 351,230 + -1.4 351,241 + +0.1 351,242 - +1.2 351,506 - RR42_RS22335 0.23 -3.6 351,559 + RR42_RS22335 0.27 -1.7 351,559 + RR42_RS22335 0.27 -0.1 351,559 + RR42_RS22335 0.27 -2.3 351,559 + RR42_RS22335 0.27 +1.4 352,031 - RR42_RS22335 0.64 -0.3 352,031 - RR42_RS22335 0.64 +0.7 352,032 - RR42_RS22335 0.64 +1.0 352,150 + RR42_RS22335 0.73 -3.9 352,237 + RR42_RS22335 0.80 +1.6 352,237 + RR42_RS22335 0.80 -2.1 352,238 - RR42_RS22335 0.80 +0.5 352,494 - +0.3 352,524 - +0.7 352,524 - -2.3 352,590 - +1.5 352,592 + -3.1 352,592 + -2.1 352,592 + -3.3 352,593 - +1.7 352,593 - -1.2 352,808 + RR42_RS22340 0.22 +0.6 352,828 + RR42_RS22340 0.24 -0.7 353,088 + RR42_RS22340 0.44 +0.6 353,089 - RR42_RS22340 0.44 +0.7 353,089 - RR42_RS22340 0.44 -1.4 353,307 + RR42_RS22340 0.61 -2.1 353,307 + RR42_RS22340 0.61 -0.8 353,307 + RR42_RS22340 0.61 -0.9 353,307 + RR42_RS22340 0.61 -1.5 353,307 + RR42_RS22340 0.61 -1.2 353,307 + RR42_RS22340 0.61 +2.0 353,307 + RR42_RS22340 0.61 -2.4 353,308 - RR42_RS22340 0.61 -3.4 353,308 - RR42_RS22340 0.61 +0.0 353,308 - RR42_RS22340 0.61 -0.5 353,308 - RR42_RS22340 0.61 +0.2 353,308 - RR42_RS22340 0.61 +1.0 353,308 - RR42_RS22340 0.61 +1.4 353,308 - RR42_RS22340 0.61 +1.1 353,308 - RR42_RS22340 0.61 +0.3 353,376 - RR42_RS22340 0.66 +0.4 353,475 - RR42_RS22340 0.74 +1.5
Or see this region's nucleotide sequence