Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22330

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22325 and RR42_RS22330 are separated by 31 nucleotidesRR42_RS22330 and RR42_RS22335 are separated by 414 nucleotides RR42_RS22325: RR42_RS22325 - hypothetical protein, at 349,168 to 350,265 _RS22325 RR42_RS22330: RR42_RS22330 - ester cyclase, at 350,297 to 350,800 _RS22330 RR42_RS22335: RR42_RS22335 - hemagglutinin, at 351,215 to 352,492 _RS22335 Position (kb) 350 351Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 349.355 kb on + strand, within RR42_RS22325at 349.355 kb on + strand, within RR42_RS22325at 349.355 kb on + strand, within RR42_RS22325at 349.355 kb on + strand, within RR42_RS22325at 349.356 kb on - strand, within RR42_RS22325at 349.380 kb on + strand, within RR42_RS22325at 349.465 kb on - strand, within RR42_RS22325at 349.517 kb on + strand, within RR42_RS22325at 349.647 kb on - strand, within RR42_RS22325at 349.787 kb on + strand, within RR42_RS22325at 349.787 kb on + strand, within RR42_RS22325at 349.788 kb on - strand, within RR42_RS22325at 349.788 kb on - strand, within RR42_RS22325at 349.788 kb on - strand, within RR42_RS22325at 349.797 kb on - strand, within RR42_RS22325at 349.878 kb on + strand, within RR42_RS22325at 349.879 kb on + strand, within RR42_RS22325at 349.914 kb on - strand, within RR42_RS22325at 350.051 kb on + strand, within RR42_RS22325at 350.051 kb on + strand, within RR42_RS22325at 350.051 kb on + strand, within RR42_RS22325at 350.069 kb on + strand, within RR42_RS22325at 350.070 kb on - strand, within RR42_RS22325at 350.299 kb on - strandat 350.622 kb on + strand, within RR42_RS22330at 350.622 kb on + strand, within RR42_RS22330at 350.623 kb on - strand, within RR42_RS22330at 350.623 kb on - strand, within RR42_RS22330at 350.679 kb on + strand, within RR42_RS22330at 350.679 kb on + strand, within RR42_RS22330at 350.871 kb on + strandat 350.872 kb on - strandat 351.001 kb on - strandat 351.005 kb on - strandat 351.064 kb on + strandat 351.155 kb on + strandat 351.156 kb on - strandat 351.159 kb on + strandat 351.159 kb on + strandat 351.230 kb on + strandat 351.241 kb on + strandat 351.242 kb on - strandat 351.506 kb on - strand, within RR42_RS22335at 351.559 kb on + strand, within RR42_RS22335at 351.559 kb on + strand, within RR42_RS22335at 351.559 kb on + strand, within RR42_RS22335at 351.559 kb on + strand, within RR42_RS22335

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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349,355 + RR42_RS22325 0.17 -2.0
349,355 + RR42_RS22325 0.17 -4.3
349,355 + RR42_RS22325 0.17 +1.4
349,355 + RR42_RS22325 0.17 +1.0
349,356 - RR42_RS22325 0.17 +0.1
349,380 + RR42_RS22325 0.19 -2.1
349,465 - RR42_RS22325 0.27 -3.2
349,517 + RR42_RS22325 0.32 -3.9
349,647 - RR42_RS22325 0.44 +0.1
349,787 + RR42_RS22325 0.56 -2.5
349,787 + RR42_RS22325 0.56 +0.6
349,788 - RR42_RS22325 0.56 -0.7
349,788 - RR42_RS22325 0.56 -0.3
349,788 - RR42_RS22325 0.56 -2.5
349,797 - RR42_RS22325 0.57 +0.5
349,878 + RR42_RS22325 0.65 -1.0
349,879 + RR42_RS22325 0.65 +0.3
349,914 - RR42_RS22325 0.68 -4.0
350,051 + RR42_RS22325 0.80 +0.1
350,051 + RR42_RS22325 0.80 -0.2
350,051 + RR42_RS22325 0.80 +1.8
350,069 + RR42_RS22325 0.82 -2.0
350,070 - RR42_RS22325 0.82 +0.2
350,299 - -0.8
350,622 + RR42_RS22330 0.64 +0.9
350,622 + RR42_RS22330 0.64 +1.3
350,623 - RR42_RS22330 0.65 -0.0
350,623 - RR42_RS22330 0.65 -0.0
350,679 + RR42_RS22330 0.76 -0.8
350,679 + RR42_RS22330 0.76 -0.2
350,871 + -0.2
350,872 - +0.9
351,001 - -0.5
351,005 - -1.1
351,064 + -4.3
351,155 + +1.8
351,156 - -1.6
351,159 + -3.8
351,159 + +1.3
351,230 + -1.4
351,241 + +0.1
351,242 - +1.2
351,506 - RR42_RS22335 0.23 -3.6
351,559 + RR42_RS22335 0.27 -1.7
351,559 + RR42_RS22335 0.27 -0.1
351,559 + RR42_RS22335 0.27 -2.3
351,559 + RR42_RS22335 0.27 +1.4

Or see this region's nucleotide sequence