Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22255 and RR42_RS22260 are separated by 24 nucleotides RR42_RS22260 and RR42_RS22265 are separated by 51 nucleotides
RR42_RS22255: RR42_RS22255 - hypothetical protein, at 330,666 to 332,096
_RS22255
RR42_RS22260: RR42_RS22260 - hypothetical protein, at 332,121 to 333,455
_RS22260
RR42_RS22265: RR42_RS22265 - hypothetical protein, at 333,507 to 337,334
_RS22265
Position (kb) 332
333
334 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 331.332 kb on + strand, within RR42_RS22255 at 331.332 kb on + strand, within RR42_RS22255 at 331.332 kb on + strand, within RR42_RS22255 at 331.333 kb on - strand, within RR42_RS22255 at 331.333 kb on - strand, within RR42_RS22255 at 331.544 kb on - strand, within RR42_RS22255 at 331.544 kb on - strand, within RR42_RS22255 at 331.564 kb on + strand, within RR42_RS22255 at 331.565 kb on - strand, within RR42_RS22255 at 331.565 kb on - strand, within RR42_RS22255 at 331.631 kb on - strand, within RR42_RS22255 at 331.678 kb on + strand, within RR42_RS22255 at 331.678 kb on + strand, within RR42_RS22255 at 331.679 kb on - strand, within RR42_RS22255 at 331.681 kb on + strand, within RR42_RS22255 at 331.682 kb on - strand, within RR42_RS22255 at 331.785 kb on + strand, within RR42_RS22255 at 331.785 kb on + strand, within RR42_RS22255 at 331.933 kb on + strand, within RR42_RS22255 at 332.068 kb on - strand at 332.212 kb on + strand at 332.257 kb on + strand, within RR42_RS22260 at 332.257 kb on + strand, within RR42_RS22260 at 332.257 kb on + strand, within RR42_RS22260 at 332.258 kb on - strand, within RR42_RS22260 at 332.258 kb on - strand, within RR42_RS22260 at 332.345 kb on - strand, within RR42_RS22260 at 332.932 kb on + strand, within RR42_RS22260 at 333.015 kb on + strand, within RR42_RS22260 at 333.015 kb on + strand, within RR42_RS22260 at 333.016 kb on - strand, within RR42_RS22260 at 333.047 kb on - strand, within RR42_RS22260 at 333.418 kb on + strand at 333.489 kb on + strand at 333.489 kb on + strand at 333.489 kb on + strand at 333.490 kb on - strand at 333.528 kb on - strand at 333.540 kb on - strand at 333.965 kb on - strand, within RR42_RS22265 at 333.965 kb on - strand, within RR42_RS22265 at 333.979 kb on + strand, within RR42_RS22265 at 333.979 kb on + strand, within RR42_RS22265 at 334.177 kb on + strand, within RR42_RS22265 at 334.309 kb on - strand, within RR42_RS22265
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 331,332 + RR42_RS22255 0.47 +2.4 331,332 + RR42_RS22255 0.47 +1.6 331,332 + RR42_RS22255 0.47 -1.3 331,333 - RR42_RS22255 0.47 -4.0 331,333 - RR42_RS22255 0.47 +1.7 331,544 - RR42_RS22255 0.61 +0.6 331,544 - RR42_RS22255 0.61 +0.6 331,564 + RR42_RS22255 0.63 +1.2 331,565 - RR42_RS22255 0.63 +0.7 331,565 - RR42_RS22255 0.63 -4.7 331,631 - RR42_RS22255 0.67 -0.8 331,678 + RR42_RS22255 0.71 +0.1 331,678 + RR42_RS22255 0.71 +0.2 331,679 - RR42_RS22255 0.71 -3.8 331,681 + RR42_RS22255 0.71 -1.0 331,682 - RR42_RS22255 0.71 -2.4 331,785 + RR42_RS22255 0.78 -2.3 331,785 + RR42_RS22255 0.78 +1.3 331,933 + RR42_RS22255 0.89 +0.5 332,068 - -1.1 332,212 + -2.3 332,257 + RR42_RS22260 0.10 +1.6 332,257 + RR42_RS22260 0.10 -1.2 332,257 + RR42_RS22260 0.10 -0.2 332,258 - RR42_RS22260 0.10 +0.2 332,258 - RR42_RS22260 0.10 -0.4 332,345 - RR42_RS22260 0.17 +2.0 332,932 + RR42_RS22260 0.61 -2.0 333,015 + RR42_RS22260 0.67 +0.8 333,015 + RR42_RS22260 0.67 -0.1 333,016 - RR42_RS22260 0.67 +0.2 333,047 - RR42_RS22260 0.69 -0.4 333,418 + +3.2 333,489 + -1.1 333,489 + -3.3 333,489 + -0.4 333,490 - -0.0 333,528 - +0.3 333,540 - +1.2 333,965 - RR42_RS22265 0.12 -4.4 333,965 - RR42_RS22265 0.12 +0.3 333,979 + RR42_RS22265 0.12 -0.6 333,979 + RR42_RS22265 0.12 +1.5 334,177 + RR42_RS22265 0.18 +1.5 334,309 - RR42_RS22265 0.21 -0.4
Or see this region's nucleotide sequence