Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22245 and RR42_RS22250 are separated by 25 nucleotides RR42_RS22250 and RR42_RS22255 are separated by 23 nucleotides RR42_RS22255 and RR42_RS22260 are separated by 24 nucleotides
RR42_RS22245: RR42_RS22245 - cytochrome C biogenesis protein, at 329,373 to 330,320
_RS22245
RR42_RS22250: RR42_RS22250 - hypothetical protein, at 330,346 to 330,642
_RS22250
RR42_RS22255: RR42_RS22255 - hypothetical protein, at 330,666 to 332,096
_RS22255
RR42_RS22260: RR42_RS22260 - hypothetical protein, at 332,121 to 333,455
_RS22260
Position (kb) 330
331
332
333 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 329.834 kb on + strand, within RR42_RS22245 at 329.834 kb on + strand, within RR42_RS22245 at 329.983 kb on - strand, within RR42_RS22245 at 330.284 kb on + strand at 330.284 kb on + strand at 330.341 kb on + strand at 330.342 kb on - strand at 330.609 kb on - strand, within RR42_RS22250 at 330.718 kb on + strand at 330.718 kb on + strand at 330.718 kb on + strand at 330.718 kb on + strand at 330.719 kb on - strand at 330.719 kb on - strand at 330.719 kb on - strand at 330.947 kb on - strand, within RR42_RS22255 at 331.332 kb on + strand, within RR42_RS22255 at 331.332 kb on + strand, within RR42_RS22255 at 331.332 kb on + strand, within RR42_RS22255 at 331.333 kb on - strand, within RR42_RS22255 at 331.333 kb on - strand, within RR42_RS22255 at 331.544 kb on - strand, within RR42_RS22255 at 331.544 kb on - strand, within RR42_RS22255 at 331.564 kb on + strand, within RR42_RS22255 at 331.565 kb on - strand, within RR42_RS22255 at 331.565 kb on - strand, within RR42_RS22255 at 331.631 kb on - strand, within RR42_RS22255 at 331.678 kb on + strand, within RR42_RS22255 at 331.678 kb on + strand, within RR42_RS22255 at 331.679 kb on - strand, within RR42_RS22255 at 331.681 kb on + strand, within RR42_RS22255 at 331.682 kb on - strand, within RR42_RS22255 at 331.785 kb on + strand, within RR42_RS22255 at 331.785 kb on + strand, within RR42_RS22255 at 331.933 kb on + strand, within RR42_RS22255 at 332.068 kb on - strand at 332.212 kb on + strand at 332.257 kb on + strand, within RR42_RS22260 at 332.257 kb on + strand, within RR42_RS22260 at 332.257 kb on + strand, within RR42_RS22260 at 332.258 kb on - strand, within RR42_RS22260 at 332.258 kb on - strand, within RR42_RS22260 at 332.345 kb on - strand, within RR42_RS22260 at 332.932 kb on + strand, within RR42_RS22260 at 333.015 kb on + strand, within RR42_RS22260 at 333.015 kb on + strand, within RR42_RS22260 at 333.016 kb on - strand, within RR42_RS22260 at 333.047 kb on - strand, within RR42_RS22260
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 329,834 + RR42_RS22245 0.49 +0.2 329,834 + RR42_RS22245 0.49 -3.6 329,983 - RR42_RS22245 0.64 -3.3 330,284 + -0.8 330,284 + -2.1 330,341 + +1.8 330,342 - +2.3 330,609 - RR42_RS22250 0.89 +1.5 330,718 + +0.9 330,718 + +0.8 330,718 + -1.6 330,718 + +0.6 330,719 - -4.3 330,719 - -0.3 330,719 - +0.3 330,947 - RR42_RS22255 0.20 +1.6 331,332 + RR42_RS22255 0.47 +2.4 331,332 + RR42_RS22255 0.47 +1.6 331,332 + RR42_RS22255 0.47 -1.3 331,333 - RR42_RS22255 0.47 -4.0 331,333 - RR42_RS22255 0.47 +1.7 331,544 - RR42_RS22255 0.61 +0.6 331,544 - RR42_RS22255 0.61 +0.6 331,564 + RR42_RS22255 0.63 +1.2 331,565 - RR42_RS22255 0.63 +0.7 331,565 - RR42_RS22255 0.63 -4.7 331,631 - RR42_RS22255 0.67 -0.8 331,678 + RR42_RS22255 0.71 +0.1 331,678 + RR42_RS22255 0.71 +0.2 331,679 - RR42_RS22255 0.71 -3.8 331,681 + RR42_RS22255 0.71 -1.0 331,682 - RR42_RS22255 0.71 -2.4 331,785 + RR42_RS22255 0.78 -2.3 331,785 + RR42_RS22255 0.78 +1.3 331,933 + RR42_RS22255 0.89 +0.5 332,068 - -1.1 332,212 + -2.3 332,257 + RR42_RS22260 0.10 +1.6 332,257 + RR42_RS22260 0.10 -1.2 332,257 + RR42_RS22260 0.10 -0.2 332,258 - RR42_RS22260 0.10 +0.2 332,258 - RR42_RS22260 0.10 -0.4 332,345 - RR42_RS22260 0.17 +2.0 332,932 + RR42_RS22260 0.61 -2.0 333,015 + RR42_RS22260 0.67 +0.8 333,015 + RR42_RS22260 0.67 -0.1 333,016 - RR42_RS22260 0.67 +0.2 333,047 - RR42_RS22260 0.69 -0.4
Or see this region's nucleotide sequence