Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21985 and RR42_RS21990 overlap by 8 nucleotides RR42_RS21990 and RR42_RS21995 overlap by 4 nucleotides RR42_RS21995 and RR42_RS22000 are separated by 1 nucleotides
RR42_RS21985: RR42_RS21985 - sugar ABC transporter, at 263,153 to 264,598
_RS21985
RR42_RS21990: RR42_RS21990 - LPS N-acetylglucosaminyl transferase, at 264,591 to 265,577
_RS21990
RR42_RS21995: RR42_RS21995 - glycosyl transferase family 1, at 265,574 to 267,175
_RS21995
RR42_RS22000: RR42_RS22000 - histidine kinase, at 267,177 to 268,547
_RS22000
Position (kb) 265
266
267
268 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 264.577 kb on - strand at 264.597 kb on - strand at 264.777 kb on + strand, within RR42_RS21990 at 264.778 kb on - strand, within RR42_RS21990 at 264.778 kb on - strand, within RR42_RS21990 at 264.778 kb on - strand, within RR42_RS21990 at 264.783 kb on + strand, within RR42_RS21990 at 264.793 kb on + strand, within RR42_RS21990 at 264.793 kb on + strand, within RR42_RS21990 at 264.793 kb on + strand, within RR42_RS21990 at 265.107 kb on + strand, within RR42_RS21990 at 265.245 kb on + strand, within RR42_RS21990 at 265.246 kb on - strand, within RR42_RS21990 at 265.273 kb on - strand, within RR42_RS21990 at 265.350 kb on + strand, within RR42_RS21990 at 265.351 kb on - strand, within RR42_RS21990 at 265.351 kb on - strand, within RR42_RS21990 at 265.351 kb on - strand, within RR42_RS21990 at 265.563 kb on + strand at 265.643 kb on + strand at 265.644 kb on - strand at 265.758 kb on - strand, within RR42_RS21995 at 266.022 kb on - strand, within RR42_RS21995 at 266.022 kb on - strand, within RR42_RS21995 at 266.057 kb on + strand, within RR42_RS21995 at 266.058 kb on - strand, within RR42_RS21995 at 266.058 kb on - strand, within RR42_RS21995 at 266.231 kb on + strand, within RR42_RS21995 at 266.231 kb on + strand, within RR42_RS21995 at 266.232 kb on - strand, within RR42_RS21995 at 266.232 kb on - strand, within RR42_RS21995 at 266.232 kb on - strand, within RR42_RS21995 at 266.232 kb on - strand, within RR42_RS21995 at 266.461 kb on + strand, within RR42_RS21995 at 266.462 kb on - strand, within RR42_RS21995 at 266.582 kb on - strand, within RR42_RS21995 at 266.663 kb on + strand, within RR42_RS21995 at 266.663 kb on + strand, within RR42_RS21995 at 266.806 kb on - strand, within RR42_RS21995 at 267.035 kb on + strand at 267.074 kb on + strand at 267.074 kb on + strand at 267.075 kb on - strand at 267.253 kb on - strand at 267.378 kb on + strand, within RR42_RS22000 at 267.379 kb on - strand, within RR42_RS22000 at 267.438 kb on - strand, within RR42_RS22000 at 267.487 kb on - strand, within RR42_RS22000 at 267.658 kb on - strand, within RR42_RS22000 at 267.693 kb on - strand, within RR42_RS22000 at 267.693 kb on - strand, within RR42_RS22000 at 267.693 kb on - strand, within RR42_RS22000 at 267.730 kb on - strand, within RR42_RS22000 at 267.813 kb on + strand, within RR42_RS22000 at 267.814 kb on - strand, within RR42_RS22000 at 267.814 kb on - strand, within RR42_RS22000 at 267.859 kb on - strand, within RR42_RS22000 at 267.894 kb on + strand, within RR42_RS22000 at 267.894 kb on + strand, within RR42_RS22000 at 267.895 kb on - strand, within RR42_RS22000 at 267.895 kb on - strand, within RR42_RS22000 at 267.895 kb on - strand, within RR42_RS22000 at 267.895 kb on - strand, within RR42_RS22000 at 267.987 kb on + strand, within RR42_RS22000 at 267.987 kb on + strand, within RR42_RS22000 at 267.988 kb on - strand, within RR42_RS22000 at 268.089 kb on + strand, within RR42_RS22000 at 268.089 kb on + strand, within RR42_RS22000 at 268.089 kb on + strand, within RR42_RS22000 at 268.124 kb on + strand, within RR42_RS22000 at 268.133 kb on + strand, within RR42_RS22000
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 264,577 - +0.5 264,597 - +1.3 264,777 + RR42_RS21990 0.19 +1.5 264,778 - RR42_RS21990 0.19 +1.5 264,778 - RR42_RS21990 0.19 +0.8 264,778 - RR42_RS21990 0.19 -0.2 264,783 + RR42_RS21990 0.19 +1.8 264,793 + RR42_RS21990 0.20 +0.3 264,793 + RR42_RS21990 0.20 +0.2 264,793 + RR42_RS21990 0.20 +0.8 265,107 + RR42_RS21990 0.52 -0.2 265,245 + RR42_RS21990 0.66 -2.5 265,246 - RR42_RS21990 0.66 +0.2 265,273 - RR42_RS21990 0.69 -2.0 265,350 + RR42_RS21990 0.77 -3.7 265,351 - RR42_RS21990 0.77 +0.8 265,351 - RR42_RS21990 0.77 -0.1 265,351 - RR42_RS21990 0.77 -0.5 265,563 + -0.5 265,643 + -1.5 265,644 - +1.2 265,758 - RR42_RS21995 0.11 -2.6 266,022 - RR42_RS21995 0.28 +0.8 266,022 - RR42_RS21995 0.28 +0.3 266,057 + RR42_RS21995 0.30 -2.3 266,058 - RR42_RS21995 0.30 +1.7 266,058 - RR42_RS21995 0.30 +0.2 266,231 + RR42_RS21995 0.41 -0.3 266,231 + RR42_RS21995 0.41 +0.4 266,232 - RR42_RS21995 0.41 -2.3 266,232 - RR42_RS21995 0.41 -3.0 266,232 - RR42_RS21995 0.41 -3.8 266,232 - RR42_RS21995 0.41 -3.5 266,461 + RR42_RS21995 0.55 -2.6 266,462 - RR42_RS21995 0.55 -0.8 266,582 - RR42_RS21995 0.63 -4.4 266,663 + RR42_RS21995 0.68 +0.1 266,663 + RR42_RS21995 0.68 -2.2 266,806 - RR42_RS21995 0.77 -0.9 267,035 + -0.5 267,074 + -2.6 267,074 + +0.8 267,075 - +1.1 267,253 - +0.4 267,378 + RR42_RS22000 0.15 +0.2 267,379 - RR42_RS22000 0.15 -0.2 267,438 - RR42_RS22000 0.19 -2.9 267,487 - RR42_RS22000 0.23 -2.3 267,658 - RR42_RS22000 0.35 +0.9 267,693 - RR42_RS22000 0.38 -1.5 267,693 - RR42_RS22000 0.38 +1.2 267,693 - RR42_RS22000 0.38 -2.7 267,730 - RR42_RS22000 0.40 -1.9 267,813 + RR42_RS22000 0.46 +0.2 267,814 - RR42_RS22000 0.46 +0.9 267,814 - RR42_RS22000 0.46 -0.5 267,859 - RR42_RS22000 0.50 +1.0 267,894 + RR42_RS22000 0.52 -2.0 267,894 + RR42_RS22000 0.52 -2.2 267,895 - RR42_RS22000 0.52 -0.1 267,895 - RR42_RS22000 0.52 +1.9 267,895 - RR42_RS22000 0.52 +1.8 267,895 - RR42_RS22000 0.52 +2.1 267,987 + RR42_RS22000 0.59 +1.1 267,987 + RR42_RS22000 0.59 +0.2 267,988 - RR42_RS22000 0.59 -2.9 268,089 + RR42_RS22000 0.67 +1.6 268,089 + RR42_RS22000 0.67 -4.3 268,089 + RR42_RS22000 0.67 +1.1 268,124 + RR42_RS22000 0.69 +1.6 268,133 + RR42_RS22000 0.70 +0.3
Or see this region's nucleotide sequence