Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21940

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21935 and RR42_RS21940 are separated by 164 nucleotidesRR42_RS21940 and RR42_RS21945 are separated by 290 nucleotides RR42_RS21935: RR42_RS21935 - 4-hydroxybenzoate transporter, at 246,261 to 247,601 _RS21935 RR42_RS21940: RR42_RS21940 - 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) (from data), at 247,766 to 248,935 _RS21940 RR42_RS21945: RR42_RS21945 - hypothetical protein, at 249,226 to 249,516 _RS21945 Position (kb) 247 248 249Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 246.799 kb on + strand, within RR42_RS21935at 246.799 kb on + strand, within RR42_RS21935at 246.823 kb on + strand, within RR42_RS21935at 246.823 kb on + strand, within RR42_RS21935at 246.823 kb on + strand, within RR42_RS21935at 246.823 kb on + strand, within RR42_RS21935at 246.824 kb on - strand, within RR42_RS21935at 246.824 kb on - strand, within RR42_RS21935at 246.939 kb on + strand, within RR42_RS21935at 246.939 kb on + strand, within RR42_RS21935at 246.940 kb on - strand, within RR42_RS21935at 247.096 kb on + strand, within RR42_RS21935at 247.148 kb on + strand, within RR42_RS21935at 247.149 kb on - strand, within RR42_RS21935at 247.201 kb on + strand, within RR42_RS21935at 247.484 kb on + strandat 247.684 kb on + strandat 247.771 kb on - strandat 247.786 kb on - strandat 247.786 kb on - strandat 247.786 kb on - strandat 247.956 kb on + strand, within RR42_RS21940at 247.957 kb on - strand, within RR42_RS21940at 248.016 kb on + strand, within RR42_RS21940at 248.016 kb on + strand, within RR42_RS21940at 248.017 kb on - strand, within RR42_RS21940at 248.017 kb on - strand, within RR42_RS21940at 248.192 kb on - strand, within RR42_RS21940at 248.194 kb on + strand, within RR42_RS21940at 248.274 kb on + strand, within RR42_RS21940at 248.277 kb on + strand, within RR42_RS21940at 248.277 kb on + strand, within RR42_RS21940at 248.278 kb on - strand, within RR42_RS21940at 248.337 kb on + strand, within RR42_RS21940at 248.337 kb on + strand, within RR42_RS21940at 248.338 kb on - strand, within RR42_RS21940at 248.338 kb on - strand, within RR42_RS21940at 248.397 kb on + strand, within RR42_RS21940at 248.497 kb on - strand, within RR42_RS21940at 248.574 kb on + strand, within RR42_RS21940at 248.575 kb on - strand, within RR42_RS21940at 248.640 kb on + strand, within RR42_RS21940at 248.701 kb on - strand, within RR42_RS21940at 248.701 kb on - strand, within RR42_RS21940at 248.823 kb on + strandat 248.824 kb on - strandat 248.824 kb on - strandat 248.885 kb on + strandat 248.968 kb on - strandat 248.977 kb on - strandat 248.989 kb on + strandat 248.989 kb on + strandat 248.989 kb on + strandat 248.990 kb on - strandat 248.995 kb on + strandat 249.379 kb on + strand, within RR42_RS21945at 249.380 kb on - strand, within RR42_RS21945at 249.512 kb on + strandat 249.512 kb on + strandat 249.512 kb on + strandat 249.513 kb on - strandat 249.513 kb on - strandat 249.598 kb on + strandat 249.855 kb on + strandat 249.855 kb on + strandat 249.856 kb on - strandat 249.924 kb on + strandat 249.924 kb on + strandat 249.924 kb on + strandat 249.925 kb on - strandat 249.925 kb on - strandat 249.925 kb on - strandat 249.925 kb on - strandat 249.925 kb on - strandat 249.925 kb on - strandat 249.925 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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246,799 + RR42_RS21935 0.40 +0.2
246,799 + RR42_RS21935 0.40 +1.7
246,823 + RR42_RS21935 0.42 +0.7
246,823 + RR42_RS21935 0.42 +0.8
246,823 + RR42_RS21935 0.42 -2.0
246,823 + RR42_RS21935 0.42 -0.8
246,824 - RR42_RS21935 0.42 +1.2
246,824 - RR42_RS21935 0.42 -0.2
246,939 + RR42_RS21935 0.51 +1.4
246,939 + RR42_RS21935 0.51 +0.9
246,940 - RR42_RS21935 0.51 +2.0
247,096 + RR42_RS21935 0.62 +1.7
247,148 + RR42_RS21935 0.66 +1.7
247,149 - RR42_RS21935 0.66 +0.3
247,201 + RR42_RS21935 0.70 +0.9
247,484 + -0.3
247,684 + -0.2
247,771 - -1.8
247,786 - -0.4
247,786 - -0.8
247,786 - +0.8
247,956 + RR42_RS21940 0.16 +2.0
247,957 - RR42_RS21940 0.16 -1.3
248,016 + RR42_RS21940 0.21 -2.1
248,016 + RR42_RS21940 0.21 +2.3
248,017 - RR42_RS21940 0.21 -2.0
248,017 - RR42_RS21940 0.21 -2.7
248,192 - RR42_RS21940 0.36 +0.2
248,194 + RR42_RS21940 0.37 +1.6
248,274 + RR42_RS21940 0.43 -0.7
248,277 + RR42_RS21940 0.44 +3.4
248,277 + RR42_RS21940 0.44 +0.1
248,278 - RR42_RS21940 0.44 +0.6
248,337 + RR42_RS21940 0.49 +1.1
248,337 + RR42_RS21940 0.49 +1.0
248,338 - RR42_RS21940 0.49 -0.3
248,338 - RR42_RS21940 0.49 -0.7
248,397 + RR42_RS21940 0.54 -1.3
248,497 - RR42_RS21940 0.62 -4.1
248,574 + RR42_RS21940 0.69 -3.5
248,575 - RR42_RS21940 0.69 +0.7
248,640 + RR42_RS21940 0.75 +0.6
248,701 - RR42_RS21940 0.80 -0.6
248,701 - RR42_RS21940 0.80 +1.7
248,823 + -1.0
248,824 - -3.3
248,824 - +1.4
248,885 + -1.6
248,968 - -1.1
248,977 - +1.3
248,989 + +0.1
248,989 + -0.1
248,989 + -3.1
248,990 - -1.0
248,995 + +0.3
249,379 + RR42_RS21945 0.53 -4.0
249,380 - RR42_RS21945 0.53 -1.1
249,512 + +0.3
249,512 + +1.0
249,512 + -0.1
249,513 - +0.7
249,513 - +2.5
249,598 + -2.3
249,855 + -2.9
249,855 + +0.1
249,856 - -2.5
249,924 + +0.1
249,924 + +0.3
249,924 + +1.0
249,925 - -2.8
249,925 - +1.4
249,925 - -1.1
249,925 - -0.2
249,925 - +0.1
249,925 - +0.8
249,925 - -2.2

Or see this region's nucleotide sequence