Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21735

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21730 and RR42_RS21735 overlap by 1 nucleotidesRR42_RS21735 and RR42_RS21740 are separated by 131 nucleotidesRR42_RS21740 and RR42_RS21745 are separated by 65 nucleotides RR42_RS21730: RR42_RS21730 - pyruvate dehydrogenase subunit beta, at 203,953 to 204,969 _RS21730 RR42_RS21735: RR42_RS21735 - acetoin dehydrogenase, at 204,969 to 206,081 _RS21735 RR42_RS21740: RR42_RS21740 - acetoin dehydrogenase, at 206,213 to 206,989 _RS21740 RR42_RS21745: RR42_RS21745 - hypothetical protein, at 207,055 to 207,810 _RS21745 Position (kb) 204 205 206 207Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 204.118 kb on + strand, within RR42_RS21730at 204.119 kb on - strand, within RR42_RS21730at 204.169 kb on + strand, within RR42_RS21730at 204.169 kb on + strand, within RR42_RS21730at 204.170 kb on - strand, within RR42_RS21730at 204.289 kb on + strand, within RR42_RS21730at 204.290 kb on - strand, within RR42_RS21730at 204.400 kb on - strand, within RR42_RS21730at 204.436 kb on + strand, within RR42_RS21730at 204.436 kb on + strand, within RR42_RS21730at 204.436 kb on + strand, within RR42_RS21730at 204.544 kb on + strand, within RR42_RS21730at 204.904 kb on + strandat 204.904 kb on + strandat 204.904 kb on + strandat 204.905 kb on - strandat 204.905 kb on - strandat 205.302 kb on + strand, within RR42_RS21735at 205.302 kb on + strand, within RR42_RS21735at 205.302 kb on + strand, within RR42_RS21735at 205.339 kb on - strand, within RR42_RS21735at 205.503 kb on - strand, within RR42_RS21735at 205.689 kb on + strand, within RR42_RS21735at 205.689 kb on + strand, within RR42_RS21735at 205.803 kb on + strand, within RR42_RS21735at 205.803 kb on + strand, within RR42_RS21735at 206.018 kb on + strandat 206.158 kb on + strandat 206.158 kb on + strandat 206.158 kb on + strandat 206.159 kb on - strandat 206.171 kb on + strandat 206.171 kb on + strandat 206.172 kb on - strandat 206.172 kb on - strandat 206.172 kb on - strandat 206.201 kb on - strandat 206.678 kb on + strand, within RR42_RS21740at 206.678 kb on + strand, within RR42_RS21740at 206.786 kb on + strand, within RR42_RS21740at 206.786 kb on + strand, within RR42_RS21740at 206.786 kb on + strand, within RR42_RS21740at 206.786 kb on + strand, within RR42_RS21740at 206.787 kb on - strand, within RR42_RS21740at 206.787 kb on - strand, within RR42_RS21740at 206.787 kb on - strand, within RR42_RS21740at 206.788 kb on + strand, within RR42_RS21740at 206.789 kb on - strand, within RR42_RS21740at 206.789 kb on - strand, within RR42_RS21740at 206.789 kb on - strand, within RR42_RS21740at 206.789 kb on - strand, within RR42_RS21740

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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204,118 + RR42_RS21730 0.16 -0.4
204,119 - RR42_RS21730 0.16 -3.3
204,169 + RR42_RS21730 0.21 +0.5
204,169 + RR42_RS21730 0.21 -0.8
204,170 - RR42_RS21730 0.21 +1.0
204,289 + RR42_RS21730 0.33 -0.2
204,290 - RR42_RS21730 0.33 -3.0
204,400 - RR42_RS21730 0.44 -0.6
204,436 + RR42_RS21730 0.47 -1.0
204,436 + RR42_RS21730 0.47 +0.3
204,436 + RR42_RS21730 0.47 -1.4
204,544 + RR42_RS21730 0.58 +0.3
204,904 + -3.8
204,904 + -2.5
204,904 + -0.5
204,905 - -0.7
204,905 - +4.6
205,302 + RR42_RS21735 0.30 +2.3
205,302 + RR42_RS21735 0.30 +0.8
205,302 + RR42_RS21735 0.30 +1.4
205,339 - RR42_RS21735 0.33 -3.6
205,503 - RR42_RS21735 0.48 +0.8
205,689 + RR42_RS21735 0.65 +1.2
205,689 + RR42_RS21735 0.65 +3.0
205,803 + RR42_RS21735 0.75 -2.3
205,803 + RR42_RS21735 0.75 +1.5
206,018 + +1.2
206,158 + +0.9
206,158 + -1.0
206,158 + -1.5
206,159 - +0.6
206,171 + +1.0
206,171 + +1.6
206,172 - -0.4
206,172 - +1.2
206,172 - -3.8
206,201 - +0.8
206,678 + RR42_RS21740 0.60 +0.8
206,678 + RR42_RS21740 0.60 +1.3
206,786 + RR42_RS21740 0.74 +0.4
206,786 + RR42_RS21740 0.74 -4.0
206,786 + RR42_RS21740 0.74 -2.0
206,786 + RR42_RS21740 0.74 -0.2
206,787 - RR42_RS21740 0.74 +1.2
206,787 - RR42_RS21740 0.74 +0.6
206,787 - RR42_RS21740 0.74 +1.5
206,788 + RR42_RS21740 0.74 -0.6
206,789 - RR42_RS21740 0.74 -3.4
206,789 - RR42_RS21740 0.74 -0.8
206,789 - RR42_RS21740 0.74 -0.4
206,789 - RR42_RS21740 0.74 -0.8

Or see this region's nucleotide sequence