Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21555 and RR42_RS21560 are separated by 11 nucleotides RR42_RS21560 and RR42_RS21565 are separated by 120 nucleotides RR42_RS21565 and RR42_RS21570 are separated by 646 nucleotides
RR42_RS21555: RR42_RS21555 - membrane protein, at 161,530 to 162,519
_RS21555
RR42_RS21560: RR42_RS21560 - hypothetical protein, at 162,531 to 163,229
_RS21560
RR42_RS21565: RR42_RS21565 - hypothetical protein, at 163,350 to 164,309
_RS21565
RR42_RS21570: RR42_RS21570 - membrane protein, at 164,956 to 166,104
_RS21570
Position (kb) 163
164
165 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 162.387 kb on + strand, within RR42_RS21555 at 162.548 kb on - strand at 162.580 kb on + strand at 162.580 kb on + strand at 162.580 kb on + strand at 162.580 kb on + strand at 162.580 kb on + strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.616 kb on + strand, within RR42_RS21560 at 162.617 kb on - strand, within RR42_RS21560 at 162.678 kb on + strand, within RR42_RS21560 at 162.761 kb on + strand, within RR42_RS21560 at 162.871 kb on + strand, within RR42_RS21560 at 162.872 kb on - strand, within RR42_RS21560 at 163.240 kb on + strand at 163.278 kb on + strand at 163.278 kb on + strand at 163.278 kb on + strand at 163.279 kb on - strand at 163.279 kb on - strand at 163.279 kb on - strand at 163.279 kb on - strand at 163.393 kb on + strand at 163.729 kb on + strand, within RR42_RS21565 at 163.729 kb on + strand, within RR42_RS21565 at 163.730 kb on - strand, within RR42_RS21565 at 163.730 kb on - strand, within RR42_RS21565 at 163.730 kb on - strand, within RR42_RS21565 at 163.730 kb on - strand, within RR42_RS21565 at 163.837 kb on + strand, within RR42_RS21565 at 163.838 kb on - strand, within RR42_RS21565 at 163.838 kb on - strand, within RR42_RS21565 at 164.034 kb on + strand, within RR42_RS21565 at 164.221 kb on + strand at 164.222 kb on - strand at 164.289 kb on + strand at 164.290 kb on - strand at 164.290 kb on - strand at 164.290 kb on - strand at 164.290 kb on - strand at 164.336 kb on + strand at 164.398 kb on - strand at 164.440 kb on - strand at 164.622 kb on + strand at 164.622 kb on + strand at 164.688 kb on + strand at 164.716 kb on - strand at 164.819 kb on - strand at 164.819 kb on - strand at 164.819 kb on - strand at 164.819 kb on - strand at 164.823 kb on - strand at 165.079 kb on + strand, within RR42_RS21570 at 165.079 kb on + strand, within RR42_RS21570 at 165.080 kb on - strand, within RR42_RS21570 at 165.080 kb on - strand, within RR42_RS21570 at 165.090 kb on - strand, within RR42_RS21570 at 165.104 kb on + strand, within RR42_RS21570 at 165.104 kb on + strand, within RR42_RS21570 at 165.105 kb on - strand, within RR42_RS21570 at 165.236 kb on + strand, within RR42_RS21570 at 165.237 kb on - strand, within RR42_RS21570 at 165.237 kb on - strand, within RR42_RS21570 at 165.237 kb on - strand, within RR42_RS21570 at 165.237 kb on - strand, within RR42_RS21570 at 165.237 kb on - strand, within RR42_RS21570
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 162,387 + RR42_RS21555 0.87 -0.3 162,548 - -0.4 162,580 + -0.7 162,580 + -3.8 162,580 + -0.4 162,580 + -1.3 162,580 + +1.7 162,581 - -0.5 162,581 - -1.7 162,581 - -3.1 162,581 - -0.4 162,581 - +2.1 162,616 + RR42_RS21560 0.12 -0.3 162,617 - RR42_RS21560 0.12 -0.6 162,678 + RR42_RS21560 0.21 +1.4 162,761 + RR42_RS21560 0.33 +1.2 162,871 + RR42_RS21560 0.49 -0.8 162,872 - RR42_RS21560 0.49 +0.8 163,240 + +1.0 163,278 + +0.2 163,278 + -3.1 163,278 + -0.4 163,279 - +1.2 163,279 - +1.3 163,279 - +0.2 163,279 - -3.7 163,393 + +0.3 163,729 + RR42_RS21565 0.39 +1.3 163,729 + RR42_RS21565 0.39 -0.5 163,730 - RR42_RS21565 0.40 +0.2 163,730 - RR42_RS21565 0.40 -0.5 163,730 - RR42_RS21565 0.40 -1.5 163,730 - RR42_RS21565 0.40 +0.1 163,837 + RR42_RS21565 0.51 +1.3 163,838 - RR42_RS21565 0.51 -0.8 163,838 - RR42_RS21565 0.51 +1.4 164,034 + RR42_RS21565 0.71 -0.3 164,221 + +0.5 164,222 - +1.8 164,289 + +0.8 164,290 - -1.7 164,290 - -1.6 164,290 - -2.1 164,290 - -2.9 164,336 + -0.4 164,398 - +0.8 164,440 - -2.9 164,622 + -0.5 164,622 + +1.0 164,688 + -2.4 164,716 - +1.4 164,819 - -4.2 164,819 - -0.7 164,819 - +0.5 164,819 - +0.7 164,823 - +0.6 165,079 + RR42_RS21570 0.11 +3.1 165,079 + RR42_RS21570 0.11 -1.6 165,080 - RR42_RS21570 0.11 +1.9 165,080 - RR42_RS21570 0.11 -2.6 165,090 - RR42_RS21570 0.12 +2.6 165,104 + RR42_RS21570 0.13 +0.9 165,104 + RR42_RS21570 0.13 +1.8 165,105 - RR42_RS21570 0.13 -4.7 165,236 + RR42_RS21570 0.24 -0.1 165,237 - RR42_RS21570 0.24 +1.5 165,237 - RR42_RS21570 0.24 -0.8 165,237 - RR42_RS21570 0.24 -0.7 165,237 - RR42_RS21570 0.24 +0.8 165,237 - RR42_RS21570 0.24 +2.6
Or see this region's nucleotide sequence