Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21395 and RR42_RS21400 are separated by 124 nucleotides RR42_RS21400 and RR42_RS21405 are separated by 102 nucleotides
RR42_RS21395: RR42_RS21395 - MFS transporter, at 129,834 to 130,835
_RS21395
RR42_RS21400: RR42_RS21400 - prolyl-tRNA synthetase, at 130,960 to 131,433
_RS21400
RR42_RS21405: RR42_RS21405 - LysR family transcriptional regulator, at 131,536 to 132,486
_RS21405
Position (kb) 131
132
133 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 130.618 kb on - strand, within RR42_RS21395 at 130.774 kb on + strand at 130.775 kb on - strand at 130.775 kb on - strand at 130.775 kb on - strand at 130.911 kb on + strand at 130.962 kb on - strand at 130.962 kb on - strand at 130.962 kb on - strand at 131.102 kb on + strand, within RR42_RS21400 at 131.106 kb on + strand, within RR42_RS21400 at 131.106 kb on + strand, within RR42_RS21400 at 131.106 kb on + strand, within RR42_RS21400 at 131.106 kb on + strand, within RR42_RS21400 at 131.107 kb on - strand, within RR42_RS21400 at 131.107 kb on - strand, within RR42_RS21400 at 131.107 kb on - strand, within RR42_RS21400 at 131.107 kb on - strand, within RR42_RS21400 at 131.107 kb on - strand, within RR42_RS21400 at 131.107 kb on - strand, within RR42_RS21400 at 131.107 kb on - strand, within RR42_RS21400 at 131.107 kb on - strand, within RR42_RS21400 at 131.266 kb on + strand, within RR42_RS21400 at 131.266 kb on + strand, within RR42_RS21400 at 131.267 kb on - strand, within RR42_RS21400 at 131.270 kb on + strand, within RR42_RS21400 at 131.271 kb on - strand, within RR42_RS21400 at 131.360 kb on + strand, within RR42_RS21400 at 131.361 kb on - strand, within RR42_RS21400 at 131.361 kb on - strand, within RR42_RS21400 at 131.452 kb on + strand at 131.453 kb on - strand at 131.453 kb on - strand at 131.491 kb on + strand at 131.494 kb on + strand at 131.494 kb on + strand at 131.494 kb on + strand at 131.495 kb on - strand at 131.495 kb on - strand at 131.496 kb on + strand at 131.496 kb on + strand at 131.497 kb on - strand at 131.645 kb on + strand, within RR42_RS21405 at 131.668 kb on - strand, within RR42_RS21405 at 131.668 kb on - strand, within RR42_RS21405 at 131.668 kb on - strand, within RR42_RS21405 at 131.669 kb on + strand, within RR42_RS21405 at 131.669 kb on + strand, within RR42_RS21405 at 131.669 kb on + strand, within RR42_RS21405 at 131.669 kb on + strand, within RR42_RS21405 at 131.669 kb on + strand, within RR42_RS21405 at 131.669 kb on + strand, within RR42_RS21405 at 131.670 kb on - strand, within RR42_RS21405 at 131.670 kb on - strand, within RR42_RS21405 at 131.670 kb on - strand, within RR42_RS21405 at 131.670 kb on - strand, within RR42_RS21405 at 131.700 kb on - strand, within RR42_RS21405 at 131.753 kb on + strand, within RR42_RS21405 at 131.754 kb on - strand, within RR42_RS21405 at 131.754 kb on - strand, within RR42_RS21405 at 131.754 kb on - strand, within RR42_RS21405 at 131.979 kb on - strand, within RR42_RS21405 at 132.137 kb on + strand, within RR42_RS21405 at 132.193 kb on - strand, within RR42_RS21405 at 132.386 kb on + strand, within RR42_RS21405 at 132.386 kb on + strand, within RR42_RS21405 at 132.387 kb on - strand, within RR42_RS21405 at 132.387 kb on - strand, within RR42_RS21405 at 132.519 kb on - strand at 132.556 kb on + strand at 132.557 kb on - strand at 132.557 kb on - strand at 132.610 kb on + strand at 132.610 kb on + strand at 132.611 kb on - strand at 132.611 kb on - strand at 132.683 kb on + strand at 132.684 kb on - strand at 132.684 kb on - strand at 132.706 kb on + strand at 132.707 kb on - strand at 132.831 kb on + strand at 132.860 kb on + strand at 132.861 kb on - strand at 132.928 kb on + strand at 132.929 kb on - strand at 132.929 kb on - strand at 133.070 kb on + strand at 133.229 kb on + strand at 133.230 kb on - strand at 133.275 kb on + strand at 133.275 kb on + strand at 133.407 kb on + strand at 133.407 kb on + strand at 133.407 kb on + strand at 133.408 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 130,618 - RR42_RS21395 0.78 -1.4 130,774 + -0.2 130,775 - +0.8 130,775 - -2.1 130,775 - +0.4 130,911 + -0.5 130,962 - -1.2 130,962 - +0.7 130,962 - +0.0 131,102 + RR42_RS21400 0.30 -0.8 131,106 + RR42_RS21400 0.31 +2.7 131,106 + RR42_RS21400 0.31 +0.0 131,106 + RR42_RS21400 0.31 -1.0 131,106 + RR42_RS21400 0.31 -0.0 131,107 - RR42_RS21400 0.31 +0.7 131,107 - RR42_RS21400 0.31 +1.1 131,107 - RR42_RS21400 0.31 +1.4 131,107 - RR42_RS21400 0.31 +0.8 131,107 - RR42_RS21400 0.31 -0.5 131,107 - RR42_RS21400 0.31 -0.8 131,107 - RR42_RS21400 0.31 +0.9 131,107 - RR42_RS21400 0.31 -3.5 131,266 + RR42_RS21400 0.65 -0.3 131,266 + RR42_RS21400 0.65 +1.7 131,267 - RR42_RS21400 0.65 +0.5 131,270 + RR42_RS21400 0.65 +1.3 131,271 - RR42_RS21400 0.66 +0.6 131,360 + RR42_RS21400 0.84 +0.4 131,361 - RR42_RS21400 0.85 -1.8 131,361 - RR42_RS21400 0.85 -0.4 131,452 + +0.0 131,453 - -1.1 131,453 - +1.9 131,491 + -3.3 131,494 + -0.3 131,494 + -0.6 131,494 + -0.5 131,495 - -0.8 131,495 - +0.2 131,496 + +0.4 131,496 + -3.9 131,497 - -3.4 131,645 + RR42_RS21405 0.11 -0.4 131,668 - RR42_RS21405 0.14 -3.7 131,668 - RR42_RS21405 0.14 -1.5 131,668 - RR42_RS21405 0.14 +1.3 131,669 + RR42_RS21405 0.14 +1.0 131,669 + RR42_RS21405 0.14 -3.2 131,669 + RR42_RS21405 0.14 -0.3 131,669 + RR42_RS21405 0.14 -2.4 131,669 + RR42_RS21405 0.14 -3.6 131,669 + RR42_RS21405 0.14 -0.5 131,670 - RR42_RS21405 0.14 +0.4 131,670 - RR42_RS21405 0.14 +1.0 131,670 - RR42_RS21405 0.14 -3.6 131,670 - RR42_RS21405 0.14 -0.9 131,700 - RR42_RS21405 0.17 -2.8 131,753 + RR42_RS21405 0.23 -2.4 131,754 - RR42_RS21405 0.23 -2.9 131,754 - RR42_RS21405 0.23 +0.2 131,754 - RR42_RS21405 0.23 -1.7 131,979 - RR42_RS21405 0.47 +1.1 132,137 + RR42_RS21405 0.63 -0.3 132,193 - RR42_RS21405 0.69 +1.6 132,386 + RR42_RS21405 0.89 -0.2 132,386 + RR42_RS21405 0.89 -1.3 132,387 - RR42_RS21405 0.89 +1.1 132,387 - RR42_RS21405 0.89 -2.7 132,519 - +0.1 132,556 + +0.3 132,557 - -0.2 132,557 - -0.6 132,610 + +2.4 132,610 + -3.5 132,611 - -0.2 132,611 - -0.0 132,683 + -2.1 132,684 - +0.8 132,684 - -0.3 132,706 + -0.8 132,707 - -2.2 132,831 + +0.4 132,860 + -1.3 132,861 - -3.1 132,928 + +1.2 132,929 - +0.9 132,929 - -2.3 133,070 + -2.9 133,229 + +1.1 133,230 - -3.9 133,275 + -3.4 133,275 + -0.7 133,407 + -0.3 133,407 + -2.5 133,407 + +1.3 133,408 - -2.3
Or see this region's nucleotide sequence