Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21175 and RR42_RS21180 are separated by 54 nucleotides RR42_RS21180 and RR42_RS21185 are separated by 172 nucleotides RR42_RS21185 and RR42_RS21190 are separated by 58 nucleotides RR42_RS21190 and RR42_RS21195 are separated by 67 nucleotides
RR42_RS21175: RR42_RS21175 - transporter, at 76,036 to 76,470
_RS21175
RR42_RS21180: RR42_RS21180 - GNAT family acetyltransferase, at 76,525 to 76,914
_RS21180
RR42_RS21185: RR42_RS21185 - AMP nucleosidase, at 77,087 to 78,583
_RS21185
RR42_RS21190: RR42_RS21190 - LysR family transcriptional regulator, at 78,642 to 79,085
_RS21190
RR42_RS21195: RR42_RS21195 - phosphohydrolase, at 79,153 to 79,848
_RS21195
Position (kb) 77
78
79 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 76.211 kb on + strand, within RR42_RS21175 at 76.211 kb on + strand, within RR42_RS21175 at 76.211 kb on + strand, within RR42_RS21175 at 76.212 kb on - strand, within RR42_RS21175 at 76.715 kb on + strand, within RR42_RS21180 at 76.938 kb on - strand at 77.020 kb on + strand at 77.020 kb on + strand at 77.083 kb on + strand at 77.189 kb on + strand at 77.273 kb on + strand, within RR42_RS21185 at 77.360 kb on + strand, within RR42_RS21185 at 77.360 kb on + strand, within RR42_RS21185 at 77.400 kb on - strand, within RR42_RS21185 at 77.402 kb on + strand, within RR42_RS21185 at 77.428 kb on - strand, within RR42_RS21185 at 77.519 kb on + strand, within RR42_RS21185 at 77.519 kb on + strand, within RR42_RS21185 at 77.520 kb on - strand, within RR42_RS21185 at 77.520 kb on - strand, within RR42_RS21185 at 77.600 kb on + strand, within RR42_RS21185 at 77.600 kb on + strand, within RR42_RS21185 at 77.601 kb on - strand, within RR42_RS21185 at 77.601 kb on - strand, within RR42_RS21185 at 77.679 kb on - strand, within RR42_RS21185 at 77.679 kb on - strand, within RR42_RS21185 at 77.679 kb on - strand, within RR42_RS21185 at 77.685 kb on - strand, within RR42_RS21185 at 77.685 kb on - strand, within RR42_RS21185 at 77.735 kb on + strand, within RR42_RS21185 at 77.735 kb on + strand, within RR42_RS21185 at 77.735 kb on + strand, within RR42_RS21185 at 77.744 kb on + strand, within RR42_RS21185 at 77.814 kb on - strand, within RR42_RS21185 at 77.912 kb on + strand, within RR42_RS21185 at 77.913 kb on - strand, within RR42_RS21185 at 78.077 kb on + strand, within RR42_RS21185 at 78.078 kb on - strand, within RR42_RS21185 at 78.095 kb on + strand, within RR42_RS21185 at 78.095 kb on + strand, within RR42_RS21185 at 78.095 kb on + strand, within RR42_RS21185 at 78.095 kb on + strand, within RR42_RS21185 at 78.095 kb on + strand, within RR42_RS21185 at 78.095 kb on + strand, within RR42_RS21185 at 78.096 kb on - strand, within RR42_RS21185 at 78.096 kb on - strand, within RR42_RS21185 at 78.099 kb on + strand, within RR42_RS21185 at 78.099 kb on + strand, within RR42_RS21185 at 78.100 kb on - strand, within RR42_RS21185 at 78.100 kb on - strand, within RR42_RS21185 at 78.296 kb on + strand, within RR42_RS21185 at 78.396 kb on + strand, within RR42_RS21185 at 78.396 kb on + strand, within RR42_RS21185 at 78.396 kb on + strand, within RR42_RS21185 at 78.396 kb on + strand, within RR42_RS21185 at 78.397 kb on - strand, within RR42_RS21185 at 78.397 kb on - strand, within RR42_RS21185 at 78.459 kb on - strand at 78.481 kb on + strand at 78.481 kb on + strand at 78.482 kb on - strand at 78.482 kb on - strand at 78.482 kb on - strand at 78.482 kb on - strand at 78.482 kb on - strand at 78.582 kb on - strand at 78.734 kb on + strand, within RR42_RS21190 at 78.735 kb on - strand, within RR42_RS21190 at 78.735 kb on - strand, within RR42_RS21190 at 78.735 kb on - strand, within RR42_RS21190 at 78.784 kb on + strand, within RR42_RS21190 at 78.784 kb on + strand, within RR42_RS21190 at 78.785 kb on - strand, within RR42_RS21190 at 78.785 kb on - strand, within RR42_RS21190 at 78.823 kb on + strand, within RR42_RS21190 at 78.824 kb on - strand, within RR42_RS21190 at 78.971 kb on - strand, within RR42_RS21190 at 79.096 kb on + strand at 79.097 kb on - strand at 79.097 kb on - strand at 79.097 kb on - strand at 79.097 kb on - strand at 79.106 kb on - strand at 79.159 kb on - strand at 79.310 kb on + strand, within RR42_RS21195 at 79.364 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.440 kb on - strand, within RR42_RS21195 at 79.440 kb on - strand, within RR42_RS21195
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 76,211 + RR42_RS21175 0.40 -1.0 76,211 + RR42_RS21175 0.40 -0.0 76,211 + RR42_RS21175 0.40 -3.4 76,212 - RR42_RS21175 0.40 +0.4 76,715 + RR42_RS21180 0.49 -0.6 76,938 - +0.9 77,020 + -3.0 77,020 + +0.4 77,083 + +3.1 77,189 + +1.0 77,273 + RR42_RS21185 0.12 -0.6 77,360 + RR42_RS21185 0.18 -1.6 77,360 + RR42_RS21185 0.18 -0.5 77,400 - RR42_RS21185 0.21 -0.1 77,402 + RR42_RS21185 0.21 -0.9 77,428 - RR42_RS21185 0.23 +0.2 77,519 + RR42_RS21185 0.29 -1.1 77,519 + RR42_RS21185 0.29 -3.1 77,520 - RR42_RS21185 0.29 +0.3 77,520 - RR42_RS21185 0.29 +1.9 77,600 + RR42_RS21185 0.34 +0.6 77,600 + RR42_RS21185 0.34 -2.6 77,601 - RR42_RS21185 0.34 -0.1 77,601 - RR42_RS21185 0.34 +0.8 77,679 - RR42_RS21185 0.40 -0.4 77,679 - RR42_RS21185 0.40 -1.3 77,679 - RR42_RS21185 0.40 -1.0 77,685 - RR42_RS21185 0.40 -0.6 77,685 - RR42_RS21185 0.40 -2.6 77,735 + RR42_RS21185 0.43 -2.6 77,735 + RR42_RS21185 0.43 -2.1 77,735 + RR42_RS21185 0.43 -0.2 77,744 + RR42_RS21185 0.44 +0.4 77,814 - RR42_RS21185 0.49 -0.6 77,912 + RR42_RS21185 0.55 -3.2 77,913 - RR42_RS21185 0.55 +0.8 78,077 + RR42_RS21185 0.66 -1.6 78,078 - RR42_RS21185 0.66 -0.0 78,095 + RR42_RS21185 0.67 -2.0 78,095 + RR42_RS21185 0.67 -0.6 78,095 + RR42_RS21185 0.67 +0.5 78,095 + RR42_RS21185 0.67 -4.1 78,095 + RR42_RS21185 0.67 -2.5 78,095 + RR42_RS21185 0.67 -3.1 78,096 - RR42_RS21185 0.67 -3.5 78,096 - RR42_RS21185 0.67 -3.0 78,099 + RR42_RS21185 0.68 +0.1 78,099 + RR42_RS21185 0.68 -4.4 78,100 - RR42_RS21185 0.68 +0.1 78,100 - RR42_RS21185 0.68 +0.8 78,296 + RR42_RS21185 0.81 +0.7 78,396 + RR42_RS21185 0.87 -1.7 78,396 + RR42_RS21185 0.87 -1.2 78,396 + RR42_RS21185 0.87 -0.9 78,396 + RR42_RS21185 0.87 -2.9 78,397 - RR42_RS21185 0.88 -1.6 78,397 - RR42_RS21185 0.88 -2.5 78,459 - -2.5 78,481 + -4.2 78,481 + -1.8 78,482 - -1.5 78,482 - -2.5 78,482 - -1.0 78,482 - -3.2 78,482 - -2.1 78,582 - -2.2 78,734 + RR42_RS21190 0.21 -1.3 78,735 - RR42_RS21190 0.21 -0.0 78,735 - RR42_RS21190 0.21 -1.9 78,735 - RR42_RS21190 0.21 -0.7 78,784 + RR42_RS21190 0.32 -0.8 78,784 + RR42_RS21190 0.32 -1.1 78,785 - RR42_RS21190 0.32 +1.1 78,785 - RR42_RS21190 0.32 +0.0 78,823 + RR42_RS21190 0.41 +2.3 78,824 - RR42_RS21190 0.41 +1.0 78,971 - RR42_RS21190 0.74 +1.5 79,096 + -3.0 79,097 - -0.6 79,097 - +1.0 79,097 - -5.7 79,097 - +0.8 79,106 - -1.5 79,159 - -1.3 79,310 + RR42_RS21195 0.23 -2.7 79,364 + RR42_RS21195 0.30 -0.8 79,439 + RR42_RS21195 0.41 -1.0 79,439 + RR42_RS21195 0.41 -1.1 79,439 + RR42_RS21195 0.41 +1.0 79,439 + RR42_RS21195 0.41 -2.7 79,439 + RR42_RS21195 0.41 +0.5 79,439 + RR42_RS21195 0.41 -3.3 79,440 - RR42_RS21195 0.41 +0.2 79,440 - RR42_RS21195 0.41 -1.0
Or see this region's nucleotide sequence