Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20915 and RR42_RS20920 are separated by 12 nucleotides RR42_RS20920 and RR42_RS20925 are separated by 278 nucleotides
RR42_RS20915: RR42_RS20915 - hypothetical protein, at 14,726 to 15,718
_RS20915
RR42_RS20920: RR42_RS20920 - glycoside hydrolase, at 15,731 to 18,355
_RS20920
RR42_RS20925: RR42_RS20925 - Crp/Fnr family transcriptional regulator, at 18,634 to 19,356
_RS20925
Position (kb) 15
16
17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 14.816 kb on + strand at 14.816 kb on + strand at 14.816 kb on + strand at 14.820 kb on + strand at 14.820 kb on + strand at 14.821 kb on - strand at 14.984 kb on + strand, within RR42_RS20915 at 14.985 kb on - strand, within RR42_RS20915 at 15.036 kb on + strand, within RR42_RS20915 at 15.037 kb on - strand, within RR42_RS20915 at 15.060 kb on - strand, within RR42_RS20915 at 15.101 kb on - strand, within RR42_RS20915 at 15.101 kb on - strand, within RR42_RS20915 at 15.174 kb on - strand, within RR42_RS20915 at 15.443 kb on + strand, within RR42_RS20915 at 15.452 kb on - strand, within RR42_RS20915 at 15.452 kb on - strand, within RR42_RS20915 at 15.497 kb on + strand, within RR42_RS20915 at 15.497 kb on + strand, within RR42_RS20915 at 15.611 kb on - strand, within RR42_RS20915 at 15.666 kb on - strand at 15.695 kb on + strand at 16.025 kb on - strand, within RR42_RS20920 at 16.361 kb on - strand, within RR42_RS20920 at 16.512 kb on - strand, within RR42_RS20920 at 17.156 kb on - strand, within RR42_RS20920 at 17.183 kb on + strand, within RR42_RS20920 at 17.184 kb on - strand, within RR42_RS20920 at 17.350 kb on + strand, within RR42_RS20920 at 17.351 kb on - strand, within RR42_RS20920 at 17.351 kb on - strand, within RR42_RS20920 at 17.351 kb on - strand, within RR42_RS20920 at 17.459 kb on + strand, within RR42_RS20920 at 17.459 kb on + strand, within RR42_RS20920 at 17.930 kb on + strand, within RR42_RS20920 at 17.930 kb on + strand, within RR42_RS20920 at 17.931 kb on - strand, within RR42_RS20920 at 17.931 kb on - strand, within RR42_RS20920 at 17.931 kb on - strand, within RR42_RS20920 at 17.931 kb on - strand, within RR42_RS20920 at 17.931 kb on - strand, within RR42_RS20920 at 18.265 kb on - strand at 18.265 kb on - strand at 18.335 kb on + strand at 18.335 kb on + strand at 18.336 kb on - strand at 18.502 kb on + strand at 18.502 kb on + strand at 18.502 kb on + strand at 18.503 kb on - strand at 18.503 kb on - strand at 18.511 kb on + strand at 18.514 kb on + strand at 18.515 kb on - strand at 18.729 kb on - strand, within RR42_RS20925 at 19.019 kb on - strand, within RR42_RS20925 at 19.239 kb on + strand, within RR42_RS20925 at 19.300 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 14,816 + +0.3 14,816 + +0.3 14,816 + +0.2 14,820 + -0.8 14,820 + -1.4 14,821 - -3.7 14,984 + RR42_RS20915 0.26 -0.2 14,985 - RR42_RS20915 0.26 -1.2 15,036 + RR42_RS20915 0.31 -2.1 15,037 - RR42_RS20915 0.31 -0.4 15,060 - RR42_RS20915 0.34 -0.4 15,101 - RR42_RS20915 0.38 -0.5 15,101 - RR42_RS20915 0.38 +0.1 15,174 - RR42_RS20915 0.45 -1.4 15,443 + RR42_RS20915 0.72 -1.3 15,452 - RR42_RS20915 0.73 -0.4 15,452 - RR42_RS20915 0.73 -0.0 15,497 + RR42_RS20915 0.78 +1.2 15,497 + RR42_RS20915 0.78 -1.1 15,611 - RR42_RS20915 0.89 +0.4 15,666 - +1.7 15,695 + +0.4 16,025 - RR42_RS20920 0.11 +3.2 16,361 - RR42_RS20920 0.24 -1.1 16,512 - RR42_RS20920 0.30 -2.2 17,156 - RR42_RS20920 0.54 +0.5 17,183 + RR42_RS20920 0.55 +2.0 17,184 - RR42_RS20920 0.55 +1.5 17,350 + RR42_RS20920 0.62 -2.0 17,351 - RR42_RS20920 0.62 -1.4 17,351 - RR42_RS20920 0.62 -1.1 17,351 - RR42_RS20920 0.62 -0.4 17,459 + RR42_RS20920 0.66 -1.0 17,459 + RR42_RS20920 0.66 +1.7 17,930 + RR42_RS20920 0.84 +0.7 17,930 + RR42_RS20920 0.84 +1.2 17,931 - RR42_RS20920 0.84 -0.3 17,931 - RR42_RS20920 0.84 +2.0 17,931 - RR42_RS20920 0.84 +0.6 17,931 - RR42_RS20920 0.84 +0.5 17,931 - RR42_RS20920 0.84 -2.5 18,265 - -0.1 18,265 - +0.4 18,335 + -0.6 18,335 + -0.8 18,336 - -2.6 18,502 + -1.8 18,502 + +1.3 18,502 + +1.7 18,503 - +1.2 18,503 - +1.4 18,511 + +2.2 18,514 + +0.6 18,515 - -2.4 18,729 - RR42_RS20925 0.13 +1.5 19,019 - RR42_RS20925 0.53 +3.3 19,239 + RR42_RS20925 0.84 +0.1 19,300 + +1.9
Or see this region's nucleotide sequence