Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20790 and RR42_RS20795 are separated by 100 nucleotides RR42_RS20795 and RR42_RS20800 are separated by 428 nucleotides
RR42_RS20790: RR42_RS20790 - isoprenylcysteine carboxyl methyltransferase, at 4,512,903 to 4,513,580
_RS20790
RR42_RS20795: RR42_RS20795 - hypothetical protein, at 4,513,681 to 4,514,133
_RS20795
RR42_RS20800: RR42_RS20800 - AraC family transcriptional regulator, at 4,514,562 to 4,515,392
_RS20800
Position (kb) 4513
4514
4515 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4512.694 kb on + strand at 4512.694 kb on + strand at 4512.796 kb on + strand at 4512.796 kb on + strand at 4512.797 kb on - strand at 4512.832 kb on - strand at 4512.846 kb on - strand at 4512.846 kb on - strand at 4513.006 kb on - strand, within RR42_RS20790 at 4513.359 kb on + strand, within RR42_RS20790 at 4513.383 kb on + strand, within RR42_RS20790 at 4513.438 kb on - strand, within RR42_RS20790 at 4513.536 kb on + strand at 4513.537 kb on - strand at 4513.643 kb on + strand at 4513.643 kb on + strand at 4513.644 kb on - strand at 4513.732 kb on + strand, within RR42_RS20795 at 4513.732 kb on + strand, within RR42_RS20795 at 4513.732 kb on + strand, within RR42_RS20795 at 4513.732 kb on + strand, within RR42_RS20795 at 4513.732 kb on + strand, within RR42_RS20795 at 4513.733 kb on - strand, within RR42_RS20795 at 4513.733 kb on - strand, within RR42_RS20795 at 4513.733 kb on - strand, within RR42_RS20795 at 4513.802 kb on + strand, within RR42_RS20795 at 4514.020 kb on + strand, within RR42_RS20795 at 4514.021 kb on - strand, within RR42_RS20795 at 4514.021 kb on - strand, within RR42_RS20795 at 4514.031 kb on + strand, within RR42_RS20795 at 4514.031 kb on + strand, within RR42_RS20795 at 4514.032 kb on - strand, within RR42_RS20795 at 4514.222 kb on + strand at 4514.223 kb on - strand at 4514.223 kb on - strand at 4514.240 kb on + strand at 4514.330 kb on + strand at 4514.330 kb on + strand at 4514.331 kb on - strand at 4514.376 kb on + strand at 4514.393 kb on + strand at 4514.395 kb on + strand at 4514.395 kb on + strand at 4514.395 kb on + strand at 4514.395 kb on + strand at 4514.395 kb on + strand at 4514.396 kb on - strand at 4514.396 kb on - strand at 4514.396 kb on - strand at 4514.396 kb on - strand at 4514.396 kb on - strand at 4514.396 kb on - strand at 4514.396 kb on - strand at 4514.586 kb on + strand at 4514.652 kb on + strand, within RR42_RS20800 at 4514.652 kb on + strand, within RR42_RS20800 at 4514.685 kb on + strand, within RR42_RS20800 at 4514.686 kb on - strand, within RR42_RS20800 at 4514.740 kb on + strand, within RR42_RS20800 at 4514.934 kb on + strand, within RR42_RS20800 at 4514.934 kb on + strand, within RR42_RS20800 at 4514.934 kb on + strand, within RR42_RS20800 at 4514.934 kb on + strand, within RR42_RS20800 at 4514.935 kb on - strand, within RR42_RS20800 at 4514.935 kb on - strand, within RR42_RS20800 at 4514.935 kb on - strand, within RR42_RS20800 at 4514.935 kb on - strand, within RR42_RS20800 at 4514.935 kb on - strand, within RR42_RS20800 at 4514.935 kb on - strand, within RR42_RS20800 at 4514.997 kb on + strand, within RR42_RS20800 at 4515.088 kb on - strand, within RR42_RS20800 at 4515.088 kb on - strand, within RR42_RS20800
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,512,694 + +1.4 4,512,694 + +1.9 4,512,796 + -3.9 4,512,796 + +0.9 4,512,797 - +1.9 4,512,832 - -2.6 4,512,846 - -2.2 4,512,846 - -0.1 4,513,006 - RR42_RS20790 0.15 -0.3 4,513,359 + RR42_RS20790 0.67 -0.3 4,513,383 + RR42_RS20790 0.71 -0.0 4,513,438 - RR42_RS20790 0.79 -1.0 4,513,536 + +0.6 4,513,537 - -0.5 4,513,643 + +0.0 4,513,643 + +1.2 4,513,644 - +0.4 4,513,732 + RR42_RS20795 0.11 -1.2 4,513,732 + RR42_RS20795 0.11 -1.3 4,513,732 + RR42_RS20795 0.11 +0.2 4,513,732 + RR42_RS20795 0.11 -2.8 4,513,732 + RR42_RS20795 0.11 +1.7 4,513,733 - RR42_RS20795 0.11 +0.7 4,513,733 - RR42_RS20795 0.11 -0.9 4,513,733 - RR42_RS20795 0.11 -1.7 4,513,802 + RR42_RS20795 0.27 +0.6 4,514,020 + RR42_RS20795 0.75 -2.1 4,514,021 - RR42_RS20795 0.75 +1.6 4,514,021 - RR42_RS20795 0.75 +0.9 4,514,031 + RR42_RS20795 0.77 -0.4 4,514,031 + RR42_RS20795 0.77 -0.0 4,514,032 - RR42_RS20795 0.77 +1.0 4,514,222 + +0.2 4,514,223 - -3.4 4,514,223 - -1.4 4,514,240 + +0.2 4,514,330 + -1.6 4,514,330 + -1.2 4,514,331 - +4.8 4,514,376 + -3.6 4,514,393 + -1.5 4,514,395 + -2.9 4,514,395 + +3.3 4,514,395 + -2.4 4,514,395 + -3.9 4,514,395 + -0.2 4,514,396 - +1.4 4,514,396 - +0.7 4,514,396 - +1.2 4,514,396 - +1.1 4,514,396 - -0.4 4,514,396 - -1.3 4,514,396 - +1.4 4,514,586 + +0.2 4,514,652 + RR42_RS20800 0.11 -1.3 4,514,652 + RR42_RS20800 0.11 -0.6 4,514,685 + RR42_RS20800 0.15 -0.6 4,514,686 - RR42_RS20800 0.15 +1.0 4,514,740 + RR42_RS20800 0.21 +0.0 4,514,934 + RR42_RS20800 0.45 -2.9 4,514,934 + RR42_RS20800 0.45 +0.1 4,514,934 + RR42_RS20800 0.45 +0.5 4,514,934 + RR42_RS20800 0.45 +0.4 4,514,935 - RR42_RS20800 0.45 -2.2 4,514,935 - RR42_RS20800 0.45 -4.3 4,514,935 - RR42_RS20800 0.45 +1.7 4,514,935 - RR42_RS20800 0.45 -1.1 4,514,935 - RR42_RS20800 0.45 -2.9 4,514,935 - RR42_RS20800 0.45 +0.4 4,514,997 + RR42_RS20800 0.52 -2.1 4,515,088 - RR42_RS20800 0.63 -0.1 4,515,088 - RR42_RS20800 0.63 -1.7
Or see this region's nucleotide sequence