Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20395 and RR42_RS20400 are separated by 175 nucleotides RR42_RS20400 and RR42_RS20405 are separated by 47 nucleotides RR42_RS20405 and RR42_RS20410 are separated by 241 nucleotides
RR42_RS20395: RR42_RS20395 - membrane protein, at 4,417,130 to 4,418,098
_RS20395
RR42_RS20400: RR42_RS20400 - aldolase, at 4,418,274 to 4,419,038
_RS20400
RR42_RS20405: RR42_RS20405 - 2-dehydropantoate 2-reductase, at 4,419,086 to 4,420,069
_RS20405
RR42_RS20410: RR42_RS20410 - transporter, at 4,420,311 to 4,421,201
_RS20410
Position (kb) 4419
4420
4421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4418.116 kb on + strand at 4418.192 kb on + strand at 4418.192 kb on + strand at 4418.192 kb on + strand at 4418.334 kb on + strand at 4418.373 kb on + strand, within RR42_RS20400 at 4418.373 kb on + strand, within RR42_RS20400 at 4418.374 kb on - strand, within RR42_RS20400 at 4418.374 kb on - strand, within RR42_RS20400 at 4418.671 kb on - strand, within RR42_RS20400 at 4418.671 kb on - strand, within RR42_RS20400 at 4418.701 kb on - strand, within RR42_RS20400 at 4418.701 kb on - strand, within RR42_RS20400 at 4418.701 kb on - strand, within RR42_RS20400 at 4418.720 kb on + strand, within RR42_RS20400 at 4418.720 kb on + strand, within RR42_RS20400 at 4418.803 kb on + strand, within RR42_RS20400 at 4418.879 kb on + strand, within RR42_RS20400 at 4418.879 kb on + strand, within RR42_RS20400 at 4418.880 kb on - strand, within RR42_RS20400 at 4419.057 kb on - strand at 4419.096 kb on + strand at 4419.096 kb on + strand at 4419.096 kb on + strand at 4419.097 kb on - strand at 4419.097 kb on - strand at 4419.282 kb on + strand, within RR42_RS20405 at 4419.283 kb on - strand, within RR42_RS20405 at 4419.283 kb on - strand, within RR42_RS20405 at 4419.283 kb on - strand, within RR42_RS20405 at 4419.286 kb on + strand, within RR42_RS20405 at 4419.286 kb on + strand, within RR42_RS20405 at 4419.533 kb on - strand, within RR42_RS20405 at 4419.718 kb on + strand, within RR42_RS20405 at 4419.718 kb on + strand, within RR42_RS20405 at 4419.719 kb on - strand, within RR42_RS20405 at 4420.064 kb on + strand at 4420.191 kb on - strand at 4420.443 kb on + strand, within RR42_RS20410 at 4420.477 kb on + strand, within RR42_RS20410 at 4420.478 kb on - strand, within RR42_RS20410 at 4420.509 kb on - strand, within RR42_RS20410 at 4420.509 kb on - strand, within RR42_RS20410 at 4420.630 kb on + strand, within RR42_RS20410 at 4420.631 kb on - strand, within RR42_RS20410 at 4420.863 kb on + strand at 4420.864 kb on - strand, within RR42_RS20410 at 4420.864 kb on - strand, within RR42_RS20410 at 4420.900 kb on + strand, within RR42_RS20410 at 4420.948 kb on + strand, within RR42_RS20410 at 4420.948 kb on + strand, within RR42_RS20410 at 4420.948 kb on + strand, within RR42_RS20410 at 4420.949 kb on - strand, within RR42_RS20410
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,418,116 + +0.2 4,418,192 + -0.6 4,418,192 + -0.5 4,418,192 + +1.7 4,418,334 + +0.2 4,418,373 + RR42_RS20400 0.13 -0.1 4,418,373 + RR42_RS20400 0.13 -1.3 4,418,374 - RR42_RS20400 0.13 -2.9 4,418,374 - RR42_RS20400 0.13 +1.0 4,418,671 - RR42_RS20400 0.52 -0.6 4,418,671 - RR42_RS20400 0.52 -1.4 4,418,701 - RR42_RS20400 0.56 +1.4 4,418,701 - RR42_RS20400 0.56 +1.1 4,418,701 - RR42_RS20400 0.56 +0.7 4,418,720 + RR42_RS20400 0.58 -0.0 4,418,720 + RR42_RS20400 0.58 +0.4 4,418,803 + RR42_RS20400 0.69 +1.3 4,418,879 + RR42_RS20400 0.79 -0.7 4,418,879 + RR42_RS20400 0.79 -1.7 4,418,880 - RR42_RS20400 0.79 -0.5 4,419,057 - +0.5 4,419,096 + -1.9 4,419,096 + +0.9 4,419,096 + +2.8 4,419,097 - +4.1 4,419,097 - +2.4 4,419,282 + RR42_RS20405 0.20 -0.9 4,419,283 - RR42_RS20405 0.20 -0.5 4,419,283 - RR42_RS20405 0.20 +1.6 4,419,283 - RR42_RS20405 0.20 -3.7 4,419,286 + RR42_RS20405 0.20 +0.8 4,419,286 + RR42_RS20405 0.20 -2.0 4,419,533 - RR42_RS20405 0.45 -3.1 4,419,718 + RR42_RS20405 0.64 +0.5 4,419,718 + RR42_RS20405 0.64 -3.3 4,419,719 - RR42_RS20405 0.64 -2.7 4,420,064 + +1.2 4,420,191 - +1.9 4,420,443 + RR42_RS20410 0.15 -3.3 4,420,477 + RR42_RS20410 0.19 -3.5 4,420,478 - RR42_RS20410 0.19 -3.2 4,420,509 - RR42_RS20410 0.22 +0.3 4,420,509 - RR42_RS20410 0.22 -2.2 4,420,630 + RR42_RS20410 0.36 -2.0 4,420,631 - RR42_RS20410 0.36 -0.1 4,420,863 + +0.7 4,420,864 - RR42_RS20410 0.62 -0.9 4,420,864 - RR42_RS20410 0.62 -2.0 4,420,900 + RR42_RS20410 0.66 -0.8 4,420,948 + RR42_RS20410 0.71 -0.7 4,420,948 + RR42_RS20410 0.71 +2.3 4,420,948 + RR42_RS20410 0.71 -3.2 4,420,949 - RR42_RS20410 0.72 -2.6
Or see this region's nucleotide sequence