Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20230

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,374,460	+		RR42_RS20225	0.24	+1.5
4,374,461	-		RR42_RS20225	0.24	+0.1
4,374,463	-		RR42_RS20225	0.25	-0.2
4,374,477	+		RR42_RS20225	0.26	-2.7
4,374,477	+		RR42_RS20225	0.26	-1.3
4,374,478	-		RR42_RS20225	0.26	+0.9
4,374,566	-		RR42_RS20225	0.35	-1.0
4,374,639	+		RR42_RS20225	0.42	+1.3
4,374,640	-		RR42_RS20225	0.42	+1.1
4,374,640	-		RR42_RS20225	0.42	-1.2
4,374,732	+		RR42_RS20225	0.52	-4.0
4,374,732	+		RR42_RS20225	0.52	+1.6
4,374,732	+		RR42_RS20225	0.52	-4.8
4,374,732	+		RR42_RS20225	0.52	+1.0
4,374,733	-		RR42_RS20225	0.52	-2.6
4,374,733	-		RR42_RS20225	0.52	+0.6
4,374,864	+		RR42_RS20225	0.65	+1.7
4,374,865	-		RR42_RS20225	0.65	+1.3
4,374,879	+		RR42_RS20225	0.66	-0.4
4,374,931	-		RR42_RS20225	0.72	-0.2
4,374,931	-		RR42_RS20225	0.72	-2.8
4,374,931	-		RR42_RS20225	0.72	+2.0
4,375,113	+		RR42_RS20225	0.90	-0.3
4,375,114	-				+2.7
4,375,114	-				+1.5
4,375,236	-				-1.3
4,375,236	-				-0.4
4,375,236	-				-0.6
4,375,286	+				-2.1
4,375,286	+				-0.4
4,375,286	+				-3.3
4,375,286	+				+2.3
4,375,287	-				+0.2
4,375,287	-				+1.3
4,375,288	+				-0.2
4,375,288	+				-0.4
4,375,660	+		RR42_RS20230	0.34	+0.0
4,375,661	-		RR42_RS20230	0.34	+2.1
4,375,661	-		RR42_RS20230	0.34	-0.2
4,375,661	-		RR42_RS20230	0.34	+0.4
4,375,818	+		RR42_RS20230	0.50	+0.9
4,375,819	-		RR42_RS20230	0.51	-1.7
4,375,929	+		RR42_RS20230	0.62	-2.0
4,375,930	-		RR42_RS20230	0.62	-3.6
4,375,930	-		RR42_RS20230	0.62	-0.4
4,375,966	+		RR42_RS20230	0.66	-1.9
4,375,966	+		RR42_RS20230	0.66	+0.1
4,375,968	+		RR42_RS20230	0.66	+0.3
4,375,969	-		RR42_RS20230	0.66	+2.0
4,375,969	-		RR42_RS20230	0.66	+0.2
4,375,969	-		RR42_RS20230	0.66	-4.3
4,376,055	-		RR42_RS20230	0.76	-2.5
4,376,289	+				-2.8
4,376,289	+				+1.0
4,376,296	+				-2.0
4,376,296	+				+1.0
4,376,554	-				-2.7
4,376,580	+				-0.2
4,376,580	+				+0.0
4,376,658	+		RR42_RS20235	0.14	-2.0
4,376,658	+		RR42_RS20235	0.14	-3.2
4,376,659	-		RR42_RS20235	0.14	-0.1
4,376,872	+		RR42_RS20235	0.43	+1.4
4,376,873	-		RR42_RS20235	0.43	-1.4
4,376,919	+		RR42_RS20235	0.49	+0.8
4,376,919	+		RR42_RS20235	0.49	+1.7
4,376,920	-		RR42_RS20235	0.49	-3.0
4,377,099	+		RR42_RS20235	0.74	+0.1
4,377,255	+				-2.8