Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19480 and RR42_RS19485 are separated by 36 nucleotides RR42_RS19485 and RR42_RS19490 are separated by 44 nucleotides RR42_RS19490 and RR42_RS19495 are separated by 58 nucleotides RR42_RS19495 and RR42_RS19500 are separated by 20 nucleotides
RR42_RS19480: RR42_RS19480 - secretion system protein G, at 4,207,182 to 4,207,649
_RS19480
RR42_RS19485: RR42_RS19485 - general secretion pathway protein GspH, at 4,207,686 to 4,208,180
_RS19485
RR42_RS19490: RR42_RS19490 - general secretion pathway protein GspI, at 4,208,225 to 4,208,605
_RS19490
RR42_RS19495: RR42_RS19495 - general secretion pathway protein GspJ, at 4,208,664 to 4,209,335
_RS19495
RR42_RS19500: RR42_RS19500 - general secretion pathway protein GspK, at 4,209,356 to 4,210,351
_RS19500
Position (kb) 4208
4209 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4207.344 kb on - strand, within RR42_RS19480 at 4207.395 kb on + strand, within RR42_RS19480 at 4207.395 kb on + strand, within RR42_RS19480 at 4207.481 kb on + strand, within RR42_RS19480 at 4207.482 kb on - strand, within RR42_RS19480 at 4207.482 kb on - strand, within RR42_RS19480 at 4207.500 kb on + strand, within RR42_RS19480 at 4207.501 kb on - strand, within RR42_RS19480 at 4207.539 kb on + strand, within RR42_RS19480 at 4207.540 kb on - strand, within RR42_RS19480 at 4207.540 kb on - strand, within RR42_RS19480 at 4207.545 kb on + strand, within RR42_RS19480 at 4207.546 kb on - strand, within RR42_RS19480 at 4207.546 kb on - strand, within RR42_RS19480 at 4207.546 kb on - strand, within RR42_RS19480 at 4207.647 kb on + strand at 4207.647 kb on + strand at 4207.647 kb on + strand at 4207.796 kb on - strand, within RR42_RS19485 at 4208.160 kb on + strand at 4208.161 kb on - strand at 4208.212 kb on + strand at 4208.212 kb on + strand at 4208.213 kb on - strand at 4208.463 kb on - strand, within RR42_RS19490 at 4208.463 kb on - strand, within RR42_RS19490 at 4208.463 kb on - strand, within RR42_RS19490 at 4208.612 kb on + strand at 4208.622 kb on - strand at 4208.630 kb on + strand at 4208.630 kb on + strand at 4208.630 kb on + strand at 4208.630 kb on + strand at 4208.630 kb on + strand at 4208.631 kb on - strand at 4208.631 kb on - strand at 4208.812 kb on + strand, within RR42_RS19495 at 4208.812 kb on + strand, within RR42_RS19495 at 4208.813 kb on - strand, within RR42_RS19495 at 4208.813 kb on - strand, within RR42_RS19495 at 4208.813 kb on - strand, within RR42_RS19495 at 4208.813 kb on - strand, within RR42_RS19495 at 4208.814 kb on + strand, within RR42_RS19495 at 4208.814 kb on + strand, within RR42_RS19495 at 4208.815 kb on - strand, within RR42_RS19495 at 4208.815 kb on - strand, within RR42_RS19495 at 4208.815 kb on - strand, within RR42_RS19495 at 4208.958 kb on + strand, within RR42_RS19495 at 4209.331 kb on + strand at 4209.331 kb on + strand at 4209.459 kb on + strand, within RR42_RS19500 at 4209.459 kb on + strand, within RR42_RS19500
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,207,344 - RR42_RS19480 0.35 +2.6 4,207,395 + RR42_RS19480 0.46 +3.1 4,207,395 + RR42_RS19480 0.46 +0.8 4,207,481 + RR42_RS19480 0.64 -2.7 4,207,482 - RR42_RS19480 0.64 +1.7 4,207,482 - RR42_RS19480 0.64 +0.6 4,207,500 + RR42_RS19480 0.68 +1.9 4,207,501 - RR42_RS19480 0.68 +0.7 4,207,539 + RR42_RS19480 0.76 +1.2 4,207,540 - RR42_RS19480 0.76 +0.4 4,207,540 - RR42_RS19480 0.76 +1.6 4,207,545 + RR42_RS19480 0.78 +2.8 4,207,546 - RR42_RS19480 0.78 +1.4 4,207,546 - RR42_RS19480 0.78 +1.6 4,207,546 - RR42_RS19480 0.78 -0.0 4,207,647 + +1.6 4,207,647 + -4.2 4,207,647 + +0.2 4,207,796 - RR42_RS19485 0.22 -2.7 4,208,160 + +0.6 4,208,161 - +0.1 4,208,212 + +0.1 4,208,212 + +0.4 4,208,213 - -3.8 4,208,463 - RR42_RS19490 0.62 +0.7 4,208,463 - RR42_RS19490 0.62 -1.9 4,208,463 - RR42_RS19490 0.62 +0.6 4,208,612 + -0.3 4,208,622 - -2.6 4,208,630 + +1.8 4,208,630 + -2.4 4,208,630 + +0.9 4,208,630 + +3.1 4,208,630 + -0.4 4,208,631 - -4.2 4,208,631 - -2.1 4,208,812 + RR42_RS19495 0.22 +4.6 4,208,812 + RR42_RS19495 0.22 +0.6 4,208,813 - RR42_RS19495 0.22 -1.8 4,208,813 - RR42_RS19495 0.22 +1.6 4,208,813 - RR42_RS19495 0.22 +0.4 4,208,813 - RR42_RS19495 0.22 +1.9 4,208,814 + RR42_RS19495 0.22 +1.7 4,208,814 + RR42_RS19495 0.22 +1.0 4,208,815 - RR42_RS19495 0.22 -1.3 4,208,815 - RR42_RS19495 0.22 +1.5 4,208,815 - RR42_RS19495 0.22 -2.0 4,208,958 + RR42_RS19495 0.44 +1.9 4,209,331 + -1.8 4,209,331 + +0.3 4,209,459 + RR42_RS19500 0.10 -0.2 4,209,459 + RR42_RS19500 0.10 +1.3
Or see this region's nucleotide sequence