Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19455 and RR42_RS19460 are separated by 417 nucleotides RR42_RS19460 and RR42_RS19465 are separated by 81 nucleotides RR42_RS19465 and RR42_RS19470 are separated by 399 nucleotides
RR42_RS19455: RR42_RS19455 - NAD(P)H dehydrogenase, at 4,202,892 to 4,203,473
_RS19455
RR42_RS19460: RR42_RS19460 - GCN5 family acetyltransferase, at 4,203,891 to 4,204,589
_RS19460
RR42_RS19465: RR42_RS19465 - AsnC family transcriptional regulator, at 4,204,671 to 4,205,162
_RS19465
RR42_RS19470: RR42_RS19470 - hypothetical protein, at 4,205,562 to 4,206,134
_RS19470
Position (kb) 4203
4204
4205 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4202.970 kb on - strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.076 kb on + strand, within RR42_RS19455 at 4203.077 kb on - strand, within RR42_RS19455 at 4203.077 kb on - strand, within RR42_RS19455 at 4203.077 kb on - strand, within RR42_RS19455 at 4203.077 kb on - strand, within RR42_RS19455 at 4203.116 kb on - strand, within RR42_RS19455 at 4203.116 kb on - strand, within RR42_RS19455 at 4203.190 kb on + strand, within RR42_RS19455 at 4203.191 kb on - strand, within RR42_RS19455 at 4203.250 kb on + strand, within RR42_RS19455 at 4203.250 kb on + strand, within RR42_RS19455 at 4203.250 kb on + strand, within RR42_RS19455 at 4203.251 kb on - strand, within RR42_RS19455 at 4203.251 kb on - strand, within RR42_RS19455 at 4203.251 kb on - strand, within RR42_RS19455 at 4203.312 kb on + strand, within RR42_RS19455 at 4203.312 kb on + strand, within RR42_RS19455 at 4203.329 kb on - strand, within RR42_RS19455 at 4203.335 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.337 kb on + strand, within RR42_RS19455 at 4203.338 kb on - strand, within RR42_RS19455 at 4203.338 kb on - strand, within RR42_RS19455 at 4203.338 kb on - strand, within RR42_RS19455 at 4203.346 kb on + strand, within RR42_RS19455 at 4203.347 kb on - strand, within RR42_RS19455 at 4203.347 kb on - strand, within RR42_RS19455 at 4203.436 kb on + strand at 4203.436 kb on + strand at 4203.437 kb on - strand at 4203.437 kb on - strand at 4203.437 kb on - strand at 4203.437 kb on - strand at 4203.437 kb on - strand at 4203.437 kb on - strand at 4203.440 kb on + strand at 4203.440 kb on + strand at 4203.531 kb on + strand at 4203.531 kb on + strand at 4203.531 kb on + strand at 4203.531 kb on + strand at 4203.531 kb on + strand at 4203.531 kb on + strand at 4203.532 kb on - strand at 4203.532 kb on - strand at 4203.686 kb on + strand at 4203.686 kb on + strand at 4203.687 kb on - strand at 4203.697 kb on - strand at 4203.742 kb on + strand at 4203.742 kb on + strand at 4203.743 kb on - strand at 4203.743 kb on - strand at 4203.764 kb on + strand at 4203.807 kb on - strand at 4203.807 kb on - strand at 4203.807 kb on - strand at 4203.855 kb on + strand at 4203.855 kb on + strand at 4203.856 kb on - strand at 4203.856 kb on - strand at 4203.861 kb on + strand at 4203.861 kb on + strand at 4203.871 kb on + strand at 4203.871 kb on + strand at 4203.872 kb on - strand at 4203.872 kb on - strand at 4203.872 kb on - strand at 4204.110 kb on + strand, within RR42_RS19460 at 4204.273 kb on + strand, within RR42_RS19460 at 4204.274 kb on - strand, within RR42_RS19460 at 4204.274 kb on - strand, within RR42_RS19460 at 4204.335 kb on + strand, within RR42_RS19460 at 4204.335 kb on + strand, within RR42_RS19460 at 4204.336 kb on - strand, within RR42_RS19460 at 4204.405 kb on - strand, within RR42_RS19460 at 4204.405 kb on - strand, within RR42_RS19460 at 4204.428 kb on + strand, within RR42_RS19460 at 4204.429 kb on - strand, within RR42_RS19460 at 4204.503 kb on + strand, within RR42_RS19460 at 4204.503 kb on + strand, within RR42_RS19460 at 4204.503 kb on + strand, within RR42_RS19460 at 4204.503 kb on + strand, within RR42_RS19460 at 4204.503 kb on + strand, within RR42_RS19460 at 4204.504 kb on - strand, within RR42_RS19460 at 4204.504 kb on - strand, within RR42_RS19460 at 4204.504 kb on - strand, within RR42_RS19460 at 4204.504 kb on - strand, within RR42_RS19460 at 4204.734 kb on + strand, within RR42_RS19465 at 4204.735 kb on - strand, within RR42_RS19465 at 4204.807 kb on + strand, within RR42_RS19465 at 4204.807 kb on + strand, within RR42_RS19465 at 4204.807 kb on + strand, within RR42_RS19465 at 4204.807 kb on + strand, within RR42_RS19465 at 4204.807 kb on + strand, within RR42_RS19465 at 4204.808 kb on - strand, within RR42_RS19465 at 4204.941 kb on + strand, within RR42_RS19465 at 4204.941 kb on + strand, within RR42_RS19465 at 4204.941 kb on + strand, within RR42_RS19465 at 4204.941 kb on + strand, within RR42_RS19465 at 4204.942 kb on - strand, within RR42_RS19465 at 4204.942 kb on - strand, within RR42_RS19465 at 4204.942 kb on - strand, within RR42_RS19465 at 4204.942 kb on - strand, within RR42_RS19465 at 4204.942 kb on - strand, within RR42_RS19465 at 4204.949 kb on + strand, within RR42_RS19465 at 4204.949 kb on + strand, within RR42_RS19465 at 4204.949 kb on + strand, within RR42_RS19465 at 4204.949 kb on + strand, within RR42_RS19465 at 4204.949 kb on + strand, within RR42_RS19465 at 4204.949 kb on + strand, within RR42_RS19465 at 4204.950 kb on - strand, within RR42_RS19465 at 4204.950 kb on - strand, within RR42_RS19465 at 4204.951 kb on + strand, within RR42_RS19465 at 4204.951 kb on + strand, within RR42_RS19465 at 4204.951 kb on + strand, within RR42_RS19465 at 4204.951 kb on + strand, within RR42_RS19465 at 4204.951 kb on + strand, within RR42_RS19465 at 4204.951 kb on + strand, within RR42_RS19465 at 4204.952 kb on - strand, within RR42_RS19465 at 4204.952 kb on - strand, within RR42_RS19465 at 4204.952 kb on - strand, within RR42_RS19465 at 4204.952 kb on - strand, within RR42_RS19465 at 4204.952 kb on - strand, within RR42_RS19465 at 4205.230 kb on + strand at 4205.231 kb on - strand at 4205.316 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,202,970 - RR42_RS19455 0.13 -0.7 4,203,076 + RR42_RS19455 0.32 +1.2 4,203,076 + RR42_RS19455 0.32 -0.9 4,203,076 + RR42_RS19455 0.32 -2.7 4,203,076 + RR42_RS19455 0.32 +2.3 4,203,076 + RR42_RS19455 0.32 -2.7 4,203,076 + RR42_RS19455 0.32 +1.5 4,203,077 - RR42_RS19455 0.32 -1.2 4,203,077 - RR42_RS19455 0.32 -0.3 4,203,077 - RR42_RS19455 0.32 -0.7 4,203,077 - RR42_RS19455 0.32 +0.3 4,203,116 - RR42_RS19455 0.38 -2.6 4,203,116 - RR42_RS19455 0.38 +1.4 4,203,190 + RR42_RS19455 0.51 +2.3 4,203,191 - RR42_RS19455 0.51 +0.7 4,203,250 + RR42_RS19455 0.62 -2.0 4,203,250 + RR42_RS19455 0.62 +2.1 4,203,250 + RR42_RS19455 0.62 +1.7 4,203,251 - RR42_RS19455 0.62 +4.2 4,203,251 - RR42_RS19455 0.62 +1.6 4,203,251 - RR42_RS19455 0.62 -1.9 4,203,312 + RR42_RS19455 0.72 -2.4 4,203,312 + RR42_RS19455 0.72 -1.6 4,203,329 - RR42_RS19455 0.75 -3.4 4,203,335 + RR42_RS19455 0.76 +0.9 4,203,337 + RR42_RS19455 0.76 +1.0 4,203,337 + RR42_RS19455 0.76 +1.5 4,203,337 + RR42_RS19455 0.76 +0.3 4,203,337 + RR42_RS19455 0.76 +2.1 4,203,337 + RR42_RS19455 0.76 +1.9 4,203,337 + RR42_RS19455 0.76 +1.1 4,203,337 + RR42_RS19455 0.76 +2.8 4,203,337 + RR42_RS19455 0.76 +0.5 4,203,337 + RR42_RS19455 0.76 -1.9 4,203,337 + RR42_RS19455 0.76 +1.2 4,203,338 - RR42_RS19455 0.77 +2.0 4,203,338 - RR42_RS19455 0.77 -0.9 4,203,338 - RR42_RS19455 0.77 +0.6 4,203,346 + RR42_RS19455 0.78 +2.5 4,203,347 - RR42_RS19455 0.78 +1.8 4,203,347 - RR42_RS19455 0.78 +1.0 4,203,436 + +1.5 4,203,436 + -0.9 4,203,437 - +0.8 4,203,437 - -3.7 4,203,437 - +1.0 4,203,437 - +1.2 4,203,437 - -0.7 4,203,437 - -3.2 4,203,440 + +2.6 4,203,440 + +1.4 4,203,531 + +1.9 4,203,531 + +2.1 4,203,531 + +1.0 4,203,531 + +0.9 4,203,531 + +1.9 4,203,531 + +0.0 4,203,532 - -1.0 4,203,532 - -3.6 4,203,686 + +1.5 4,203,686 + -0.4 4,203,687 - +1.9 4,203,697 - -2.6 4,203,742 + +0.7 4,203,742 + +1.4 4,203,743 - +1.4 4,203,743 - -0.5 4,203,764 + -1.6 4,203,807 - -1.7 4,203,807 - -0.6 4,203,807 - +0.2 4,203,855 + +0.1 4,203,855 + -1.4 4,203,856 - -1.9 4,203,856 - -0.6 4,203,861 + -2.4 4,203,861 + +0.7 4,203,871 + +1.4 4,203,871 + +1.5 4,203,872 - -3.0 4,203,872 - -2.4 4,203,872 - -0.6 4,204,110 + RR42_RS19460 0.31 -2.9 4,204,273 + RR42_RS19460 0.55 -3.3 4,204,274 - RR42_RS19460 0.55 -3.7 4,204,274 - RR42_RS19460 0.55 -2.5 4,204,335 + RR42_RS19460 0.64 -3.3 4,204,335 + RR42_RS19460 0.64 -1.8 4,204,336 - RR42_RS19460 0.64 +1.2 4,204,405 - RR42_RS19460 0.74 -0.9 4,204,405 - RR42_RS19460 0.74 -0.9 4,204,428 + RR42_RS19460 0.77 -3.4 4,204,429 - RR42_RS19460 0.77 -1.5 4,204,503 + RR42_RS19460 0.88 -0.3 4,204,503 + RR42_RS19460 0.88 +0.1 4,204,503 + RR42_RS19460 0.88 -0.1 4,204,503 + RR42_RS19460 0.88 -2.6 4,204,503 + RR42_RS19460 0.88 -1.9 4,204,504 - RR42_RS19460 0.88 -2.8 4,204,504 - RR42_RS19460 0.88 -0.9 4,204,504 - RR42_RS19460 0.88 -0.7 4,204,504 - RR42_RS19460 0.88 -3.5 4,204,734 + RR42_RS19465 0.13 +0.3 4,204,735 - RR42_RS19465 0.13 +0.8 4,204,807 + RR42_RS19465 0.28 -1.8 4,204,807 + RR42_RS19465 0.28 +0.2 4,204,807 + RR42_RS19465 0.28 -0.4 4,204,807 + RR42_RS19465 0.28 +1.0 4,204,807 + RR42_RS19465 0.28 +0.2 4,204,808 - RR42_RS19465 0.28 -0.6 4,204,941 + RR42_RS19465 0.55 +0.7 4,204,941 + RR42_RS19465 0.55 +0.8 4,204,941 + RR42_RS19465 0.55 +1.9 4,204,941 + RR42_RS19465 0.55 -0.6 4,204,942 - RR42_RS19465 0.55 -1.2 4,204,942 - RR42_RS19465 0.55 -1.5 4,204,942 - RR42_RS19465 0.55 +1.2 4,204,942 - RR42_RS19465 0.55 +1.3 4,204,942 - RR42_RS19465 0.55 -0.3 4,204,949 + RR42_RS19465 0.57 +0.2 4,204,949 + RR42_RS19465 0.57 -3.2 4,204,949 + RR42_RS19465 0.57 +2.1 4,204,949 + RR42_RS19465 0.57 +0.7 4,204,949 + RR42_RS19465 0.57 +0.9 4,204,949 + RR42_RS19465 0.57 -2.3 4,204,950 - RR42_RS19465 0.57 -3.6 4,204,950 - RR42_RS19465 0.57 +2.2 4,204,951 + RR42_RS19465 0.57 -1.2 4,204,951 + RR42_RS19465 0.57 +0.3 4,204,951 + RR42_RS19465 0.57 -2.3 4,204,951 + RR42_RS19465 0.57 -2.7 4,204,951 + RR42_RS19465 0.57 -0.8 4,204,951 + RR42_RS19465 0.57 -3.0 4,204,952 - RR42_RS19465 0.57 -2.7 4,204,952 - RR42_RS19465 0.57 -1.6 4,204,952 - RR42_RS19465 0.57 -2.5 4,204,952 - RR42_RS19465 0.57 +0.7 4,204,952 - RR42_RS19465 0.57 +0.5 4,205,230 + +1.8 4,205,231 - -3.4 4,205,316 + +0.2
Or see this region's nucleotide sequence