Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18900 and RR42_RS18905 are separated by 122 nucleotides RR42_RS18905 and RR42_RS18910 are separated by 4 nucleotides RR42_RS18910 and RR42_RS18915 are separated by 88 nucleotides
RR42_RS18900: RR42_RS18900 - membrane protein, at 4,093,357 to 4,093,980
_RS18900
RR42_RS18905: RR42_RS18905 - imidazoleglycerol-phosphate dehydratase, at 4,094,103 to 4,094,696
_RS18905
RR42_RS18910: RR42_RS18910 - histidinol-phosphate aminotransferase, at 4,094,701 to 4,095,801
_RS18910
RR42_RS18915: RR42_RS18915 - histidinol dehydrogenase, at 4,095,890 to 4,097,227
_RS18915
Position (kb)
4094
4095
4096 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4093.785 kb on + strand, within RR42_RS18900 at 4093.785 kb on + strand, within RR42_RS18900 at 4093.785 kb on + strand, within RR42_RS18900 at 4093.786 kb on - strand, within RR42_RS18900 at 4093.869 kb on + strand, within RR42_RS18900 at 4093.869 kb on + strand, within RR42_RS18900 at 4093.869 kb on + strand, within RR42_RS18900 at 4093.869 kb on + strand, within RR42_RS18900 at 4093.870 kb on - strand, within RR42_RS18900 at 4093.870 kb on - strand, within RR42_RS18900 at 4093.870 kb on - strand, within RR42_RS18900 at 4093.870 kb on - strand, within RR42_RS18900 at 4093.870 kb on - strand, within RR42_RS18900 at 4093.968 kb on + strand at 4093.968 kb on + strand at 4093.968 kb on + strand at 4093.969 kb on - strand at 4093.969 kb on - strand at 4093.969 kb on - strand at 4093.969 kb on - strand at 4093.969 kb on - strand at 4093.975 kb on - strand at 4093.975 kb on - strand at 4093.991 kb on + strand at 4093.991 kb on + strand at 4093.992 kb on - strand at 4093.992 kb on - strand at 4095.895 kb on + strand at 4095.895 kb on + strand at 4095.896 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,093,785 + RR42_RS18900 0.69 -2.0 4,093,785 + RR42_RS18900 0.69 -1.1 4,093,785 + RR42_RS18900 0.69 -1.5 4,093,786 - RR42_RS18900 0.69 -2.9 4,093,869 + RR42_RS18900 0.82 +2.7 4,093,869 + RR42_RS18900 0.82 -1.0 4,093,869 + RR42_RS18900 0.82 -1.6 4,093,869 + RR42_RS18900 0.82 -0.6 4,093,870 - RR42_RS18900 0.82 +1.8 4,093,870 - RR42_RS18900 0.82 -1.3 4,093,870 - RR42_RS18900 0.82 -2.8 4,093,870 - RR42_RS18900 0.82 +4.7 4,093,870 - RR42_RS18900 0.82 -0.2 4,093,968 + -1.7 4,093,968 + +1.4 4,093,968 + -2.8 4,093,969 - -0.0 4,093,969 - +1.6 4,093,969 - -1.5 4,093,969 - +2.5 4,093,969 - -3.5 4,093,975 - -0.8 4,093,975 - -0.5 4,093,991 + -2.8 4,093,991 + -3.0 4,093,992 - -2.3 4,093,992 - -0.5 4,095,895 + +0.7 4,095,895 + -0.1 4,095,896 - -2.3
Or see this region's nucleotide sequence