Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18445

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,992,979	+		RR42_RS18435	0.19	+1.3
3,992,979	+		RR42_RS18435	0.19	-4.1
3,992,979	+		RR42_RS18435	0.19	-0.7
3,992,979	+		RR42_RS18435	0.19	-1.5
3,992,979	+		RR42_RS18435	0.19	-2.0
3,992,979	+		RR42_RS18435	0.19	+4.2
3,992,980	-		RR42_RS18435	0.19	-0.4
3,992,980	-		RR42_RS18435	0.19	-0.1
3,992,980	-		RR42_RS18435	0.19	+0.2
3,992,980	-		RR42_RS18435	0.19	+1.3
3,992,980	-		RR42_RS18435	0.19	-0.8
3,992,980	-		RR42_RS18435	0.19	-1.9
3,992,980	-		RR42_RS18435	0.19	-1.3
3,993,026	+		RR42_RS18435	0.30	-0.0
3,993,027	-		RR42_RS18435	0.31	+1.7
3,993,027	-		RR42_RS18435	0.31	-1.1
3,993,027	-		RR42_RS18435	0.31	+0.4
3,993,027	-		RR42_RS18435	0.31	+1.6
3,993,135	+		RR42_RS18435	0.57	-2.0
3,993,136	-		RR42_RS18435	0.57	-1.0
3,993,136	-		RR42_RS18435	0.57	+1.2
3,993,136	-		RR42_RS18435	0.57	-0.3
3,993,146	-		RR42_RS18435	0.59	+1.2
3,993,196	+		RR42_RS18435	0.71	-1.0
3,993,221	+		RR42_RS18435	0.78	+0.2
3,993,221	+		RR42_RS18435	0.78	-3.0
3,993,221	+		RR42_RS18435	0.78	-1.5
3,993,221	+		RR42_RS18435	0.78	+0.1
3,993,221	+		RR42_RS18435	0.78	-1.0
3,993,222	-		RR42_RS18435	0.78	+0.4
3,993,222	-		RR42_RS18435	0.78	-0.6
3,993,222	-		RR42_RS18435	0.78	+1.6
3,993,222	-		RR42_RS18435	0.78	-0.5
3,993,277	+				-1.4
3,993,278	-				-2.2
3,993,406	+				+1.6
3,993,553	+		RR42_RS18440	0.24	+1.0
3,993,553	+		RR42_RS18440	0.24	+0.8
3,993,553	+		RR42_RS18440	0.24	+0.6
3,993,554	-		RR42_RS18440	0.24	-0.1
3,993,568	-		RR42_RS18440	0.27	+0.9
3,993,568	-		RR42_RS18440	0.27	+2.4
3,993,784	+		RR42_RS18440	0.70	-2.9
3,993,784	+		RR42_RS18440	0.70	-0.6
3,993,784	+		RR42_RS18440	0.70	-1.4
3,993,784	+		RR42_RS18440	0.70	+1.7
3,993,784	+		RR42_RS18440	0.70	-3.6
3,993,785	-		RR42_RS18440	0.70	-1.6
3,993,785	-		RR42_RS18440	0.70	-2.7
3,993,785	-		RR42_RS18440	0.70	+1.6
3,993,832	+		RR42_RS18440	0.80	-0.9
3,993,918	+				+0.1
3,993,918	+				-2.1
3,993,919	-				-1.6
3,994,044	+		RR42_RS18445	0.10	+1.4
3,994,044	+		RR42_RS18445	0.10	-0.5
3,994,044	+		RR42_RS18445	0.10	-1.4
3,994,044	+		RR42_RS18445	0.10	-1.5
3,994,045	-		RR42_RS18445	0.10	+1.3
3,994,048	-		RR42_RS18445	0.11	-0.1
3,994,054	+		RR42_RS18445	0.11	-3.7
3,994,055	-		RR42_RS18445	0.11	-0.0
3,994,220	+		RR42_RS18445	0.26	-1.7
3,994,220	+		RR42_RS18445	0.26	+0.4
3,994,220	+		RR42_RS18445	0.26	+0.4
3,994,221	-		RR42_RS18445	0.26	-0.3
3,994,221	-		RR42_RS18445	0.26	-1.9
3,994,221	-		RR42_RS18445	0.26	-0.3
3,994,221	-		RR42_RS18445	0.26	-0.0
3,994,293	+		RR42_RS18445	0.32	-0.2
3,994,293	+		RR42_RS18445	0.32	-2.5
3,994,293	+		RR42_RS18445	0.32	-2.1
3,994,293	+		RR42_RS18445	0.32	-0.2
3,994,294	-		RR42_RS18445	0.33	+0.1
3,994,294	-		RR42_RS18445	0.33	+1.0
3,994,583	+		RR42_RS18445	0.58	-1.1
3,994,632	+		RR42_RS18445	0.63	+1.3
3,994,632	+		RR42_RS18445	0.63	-0.3
3,994,632	+		RR42_RS18445	0.63	-1.8
3,994,632	+		RR42_RS18445	0.63	-1.7
3,994,632	+		RR42_RS18445	0.63	-0.1
3,994,632	+		RR42_RS18445	0.63	+1.7
3,994,632	+		RR42_RS18445	0.63	+0.3
3,994,632	+		RR42_RS18445	0.63	-1.0
3,994,633	-		RR42_RS18445	0.63	+0.6
3,994,633	-		RR42_RS18445	0.63	-3.7
3,994,633	-		RR42_RS18445	0.63	-1.4
3,994,633	-		RR42_RS18445	0.63	+1.0
3,994,633	-		RR42_RS18445	0.63	-1.9
3,994,719	+		RR42_RS18445	0.70	+0.4
3,995,027	+				+0.0
3,995,028	-				-2.6
3,995,028	-				+1.6
3,995,028	-				-2.0
3,995,030	+				-2.7
3,995,030	+				+2.2
3,995,030	+				+0.9
3,995,031	-				+2.0
3,995,031	-				+0.5
3,995,031	-				+0.6
3,995,031	-				+1.5
3,995,294	-		RR42_RS18450	0.23	-1.2
3,995,384	+		RR42_RS18450	0.32	-3.7
3,995,384	+		RR42_RS18450	0.32	+0.8
3,995,385	-		RR42_RS18450	0.32	+0.3
3,995,385	-		RR42_RS18450	0.32	+1.6
3,995,590	+		RR42_RS18450	0.51	-2.2
3,995,590	+		RR42_RS18450	0.51	+1.5
3,995,714	+		RR42_RS18450	0.63	-4.0
3,995,714	+		RR42_RS18450	0.63	-1.2
3,995,715	-		RR42_RS18450	0.63	+0.1
3,995,715	-		RR42_RS18450	0.63	-3.5
3,995,715	-		RR42_RS18450	0.63	-0.8
3,995,715	-		RR42_RS18450	0.63	+0.3