Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18040 and RR42_RS18045 are separated by 173 nucleotides RR42_RS18045 and RR42_RS18050 are separated by 492 nucleotides
RR42_RS18040: RR42_RS18040 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, at 3,902,439 to 3,903,356
_RS18040
RR42_RS18045: RR42_RS18045 - peroxiredoxin, at 3,903,530 to 3,904,036
_RS18045
RR42_RS18050: RR42_RS18050 - cell division protein FtsZ, at 3,904,529 to 3,905,728
_RS18050
Position (kb)
3903
3904
3905 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3903.402 kb on - strand at 3903.402 kb on - strand at 3903.413 kb on - strand at 3903.459 kb on - strand at 3903.459 kb on - strand at 3903.472 kb on - strand at 3903.472 kb on - strand at 3903.529 kb on - strand at 3903.532 kb on - strand at 3903.636 kb on + strand, within RR42_RS18045 at 3903.636 kb on + strand, within RR42_RS18045 at 3903.637 kb on - strand, within RR42_RS18045 at 3903.637 kb on - strand, within RR42_RS18045 at 3903.637 kb on - strand, within RR42_RS18045 at 3903.650 kb on + strand, within RR42_RS18045 at 3903.650 kb on + strand, within RR42_RS18045 at 3903.650 kb on + strand, within RR42_RS18045 at 3903.650 kb on + strand, within RR42_RS18045 at 3903.651 kb on - strand, within RR42_RS18045 at 3903.651 kb on - strand, within RR42_RS18045 at 3903.883 kb on + strand, within RR42_RS18045 at 3903.883 kb on + strand, within RR42_RS18045 at 3904.027 kb on + strand at 3904.027 kb on + strand at 3904.057 kb on + strand at 3904.070 kb on + strand at 3904.070 kb on + strand at 3904.070 kb on + strand at 3904.070 kb on + strand at 3904.070 kb on + strand at 3904.070 kb on + strand at 3904.070 kb on + strand at 3904.071 kb on - strand at 3904.071 kb on - strand at 3904.071 kb on - strand at 3904.071 kb on - strand at 3904.071 kb on - strand at 3904.071 kb on - strand at 3904.078 kb on + strand at 3904.078 kb on + strand at 3904.078 kb on + strand at 3904.079 kb on - strand at 3904.079 kb on - strand at 3904.121 kb on - strand at 3904.207 kb on + strand at 3904.207 kb on + strand at 3904.208 kb on - strand at 3904.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,903,402 - +0.9 3,903,402 - +0.3 3,903,413 - +1.6 3,903,459 - -0.1 3,903,459 - -1.0 3,903,472 - -1.9 3,903,472 - +0.1 3,903,529 - -0.0 3,903,532 - +1.3 3,903,636 + RR42_RS18045 0.21 -1.2 3,903,636 + RR42_RS18045 0.21 -4.5 3,903,637 - RR42_RS18045 0.21 -4.1 3,903,637 - RR42_RS18045 0.21 -0.8 3,903,637 - RR42_RS18045 0.21 -2.6 3,903,650 + RR42_RS18045 0.24 -1.8 3,903,650 + RR42_RS18045 0.24 -2.3 3,903,650 + RR42_RS18045 0.24 -0.1 3,903,650 + RR42_RS18045 0.24 -4.0 3,903,651 - RR42_RS18045 0.24 -2.1 3,903,651 - RR42_RS18045 0.24 +0.0 3,903,883 + RR42_RS18045 0.70 -1.9 3,903,883 + RR42_RS18045 0.70 -2.9 3,904,027 + -1.6 3,904,027 + -3.6 3,904,057 + +0.8 3,904,070 + -3.1 3,904,070 + -4.6 3,904,070 + -2.6 3,904,070 + -0.3 3,904,070 + +1.0 3,904,070 + -1.8 3,904,070 + -3.5 3,904,071 - +1.9 3,904,071 - +1.6 3,904,071 - -0.1 3,904,071 - +0.6 3,904,071 - +1.3 3,904,071 - -0.8 3,904,078 + +0.1 3,904,078 + -0.3 3,904,078 + -1.1 3,904,079 - +1.2 3,904,079 - +1.5 3,904,121 - +3.1 3,904,207 + -0.0 3,904,207 + +0.0 3,904,208 - -1.3 3,904,450 - +1.8
Or see this region's nucleotide sequence