Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18045

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS18040 and RR42_RS18045 are separated by 173 nucleotidesRR42_RS18045 and RR42_RS18050 are separated by 492 nucleotides RR42_RS18040: RR42_RS18040 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, at 3,902,439 to 3,903,356 _RS18040 RR42_RS18045: RR42_RS18045 - peroxiredoxin, at 3,903,530 to 3,904,036 _RS18045 RR42_RS18050: RR42_RS18050 - cell division protein FtsZ, at 3,904,529 to 3,905,728 _RS18050 Position (kb) 3903 3904 3905Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3903.402 kb on - strandat 3903.402 kb on - strandat 3903.413 kb on - strandat 3903.459 kb on - strandat 3903.459 kb on - strandat 3903.472 kb on - strandat 3903.472 kb on - strandat 3903.529 kb on - strandat 3903.532 kb on - strandat 3903.636 kb on + strand, within RR42_RS18045at 3903.636 kb on + strand, within RR42_RS18045at 3903.637 kb on - strand, within RR42_RS18045at 3903.637 kb on - strand, within RR42_RS18045at 3903.637 kb on - strand, within RR42_RS18045at 3903.650 kb on + strand, within RR42_RS18045at 3903.650 kb on + strand, within RR42_RS18045at 3903.650 kb on + strand, within RR42_RS18045at 3903.650 kb on + strand, within RR42_RS18045at 3903.651 kb on - strand, within RR42_RS18045at 3903.651 kb on - strand, within RR42_RS18045at 3903.883 kb on + strand, within RR42_RS18045at 3903.883 kb on + strand, within RR42_RS18045at 3904.027 kb on + strandat 3904.027 kb on + strandat 3904.057 kb on + strandat 3904.070 kb on + strandat 3904.070 kb on + strandat 3904.070 kb on + strandat 3904.070 kb on + strandat 3904.070 kb on + strandat 3904.070 kb on + strandat 3904.070 kb on + strandat 3904.071 kb on - strandat 3904.071 kb on - strandat 3904.071 kb on - strandat 3904.071 kb on - strandat 3904.071 kb on - strandat 3904.071 kb on - strandat 3904.078 kb on + strandat 3904.078 kb on + strandat 3904.078 kb on + strandat 3904.079 kb on - strandat 3904.079 kb on - strandat 3904.121 kb on - strandat 3904.207 kb on + strandat 3904.207 kb on + strandat 3904.208 kb on - strandat 3904.450 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,903,402 - +0.9
3,903,402 - +0.3
3,903,413 - +1.6
3,903,459 - -0.1
3,903,459 - -1.0
3,903,472 - -1.9
3,903,472 - +0.1
3,903,529 - -0.0
3,903,532 - +1.3
3,903,636 + RR42_RS18045 0.21 -1.2
3,903,636 + RR42_RS18045 0.21 -4.5
3,903,637 - RR42_RS18045 0.21 -4.1
3,903,637 - RR42_RS18045 0.21 -0.8
3,903,637 - RR42_RS18045 0.21 -2.6
3,903,650 + RR42_RS18045 0.24 -1.8
3,903,650 + RR42_RS18045 0.24 -2.3
3,903,650 + RR42_RS18045 0.24 -0.1
3,903,650 + RR42_RS18045 0.24 -4.0
3,903,651 - RR42_RS18045 0.24 -2.1
3,903,651 - RR42_RS18045 0.24 +0.0
3,903,883 + RR42_RS18045 0.70 -1.9
3,903,883 + RR42_RS18045 0.70 -2.9
3,904,027 + -1.6
3,904,027 + -3.6
3,904,057 + +0.8
3,904,070 + -3.1
3,904,070 + -4.6
3,904,070 + -2.6
3,904,070 + -0.3
3,904,070 + +1.0
3,904,070 + -1.8
3,904,070 + -3.5
3,904,071 - +1.9
3,904,071 - +1.6
3,904,071 - -0.1
3,904,071 - +0.6
3,904,071 - +1.3
3,904,071 - -0.8
3,904,078 + +0.1
3,904,078 + -0.3
3,904,078 + -1.1
3,904,079 - +1.2
3,904,079 - +1.5
3,904,121 - +3.1
3,904,207 + -0.0
3,904,207 + +0.0
3,904,208 - -1.3
3,904,450 - +1.8

Or see this region's nucleotide sequence