Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16550

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,584,371	+				+1.3
3,584,375	+				+0.5
3,584,424	-				+0.5
3,584,676	+		RR42_RS16545	0.23	+0.1
3,584,676	+		RR42_RS16545	0.23	-1.5
3,584,676	+		RR42_RS16545	0.23	+2.4
3,584,677	-		RR42_RS16545	0.23	-0.1
3,584,728	-		RR42_RS16545	0.34	+1.6
3,584,934	+		RR42_RS16545	0.78	+3.0
3,584,934	+		RR42_RS16545	0.78	+4.3
3,584,935	-		RR42_RS16545	0.78	+0.8
3,584,935	-		RR42_RS16545	0.78	-1.1
3,585,010	+				+2.8
3,585,071	+				+4.5
3,585,071	+				+1.6
3,585,072	-				+1.3
3,585,084	+				+3.8
3,585,085	-				+0.6
3,585,085	-				-0.6
3,585,086	+				+3.5
3,585,086	+				+4.5
3,585,087	-				+0.7
3,585,087	-				-0.2
3,585,119	-				-1.2
3,585,119	-				-0.4
3,585,157	+				+5.9
3,585,266	+				+1.1
3,585,267	-				+2.4
3,585,267	-				+2.3
3,585,269	+				+3.9
3,585,270	-				+1.0
3,585,282	-				-0.5
3,585,297	+				+4.0
3,585,400	+				-0.6
3,585,452	+				-0.2
3,585,452	+				+0.1
3,585,456	+				+0.4
3,585,456	+				+1.1
3,585,559	-		RR42_RS16550	0.11	+1.5
3,585,559	-		RR42_RS16550	0.11	+0.8
3,585,603	+		RR42_RS16550	0.13	-2.7
3,585,604	-		RR42_RS16550	0.13	-1.6
3,585,604	-		RR42_RS16550	0.13	-3.1
3,585,858	+		RR42_RS16550	0.25	-3.3
3,585,858	+		RR42_RS16550	0.25	-0.4
3,585,858	+		RR42_RS16550	0.25	-0.7
3,585,859	-		RR42_RS16550	0.25	+1.3
3,585,859	-		RR42_RS16550	0.25	+1.1
3,585,859	-		RR42_RS16550	0.25	+1.7
3,585,901	-		RR42_RS16550	0.26	+0.6
3,585,987	+		RR42_RS16550	0.30	-2.1
3,586,153	+		RR42_RS16550	0.38	-0.7
3,586,153	+		RR42_RS16550	0.38	-2.7
3,586,323	+		RR42_RS16550	0.46	+0.8
3,586,323	+		RR42_RS16550	0.46	-3.9
3,586,990	+		RR42_RS16550	0.76	+0.7
3,586,991	-		RR42_RS16550	0.76	+0.7
3,587,086	-		RR42_RS16550	0.80	-0.7
3,587,424	+				+0.6
3,587,424	+				+0.3
3,587,424	+				+0.7
3,587,425	-				-2.5
3,587,517	+				+1.0
3,587,518	-				+0.8
3,587,523	+				+0.4
3,587,523	+				-1.5
3,587,523	+				+1.7
3,587,523	+				-1.9
3,587,524	-				+1.5
3,587,524	-				+0.1
3,587,524	-				-0.0
3,587,524	-				-2.1
3,587,524	-				-1.2
3,587,631	+				+0.7
3,588,131	+		RR42_RS16555	0.72	-0.2
3,588,132	-		RR42_RS16555	0.73	-1.8
3,588,176	+		RR42_RS16555	0.80	+0.1
3,588,177	-		RR42_RS16555	0.80	+0.6
3,588,298	+				+2.4
3,588,299	-				+0.8