Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16230

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16225 and RR42_RS16230 are separated by 138 nucleotidesRR42_RS16230 and RR42_RS16235 overlap by 4 nucleotides RR42_RS16225: RR42_RS16225 - cytosol aminopeptidase, at 3,512,028 to 3,513,596 _RS16225 RR42_RS16230: RR42_RS16230 - permease, at 3,513,735 to 3,514,859 _RS16230 RR42_RS16235: RR42_RS16235 - permease, at 3,514,856 to 3,516,010 _RS16235 Position (kb) 3513 3514 3515Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3512.762 kb on - strand, within RR42_RS16225at 3512.912 kb on - strand, within RR42_RS16225at 3512.927 kb on + strand, within RR42_RS16225at 3512.927 kb on + strand, within RR42_RS16225at 3512.927 kb on + strand, within RR42_RS16225at 3512.927 kb on + strand, within RR42_RS16225at 3512.927 kb on + strand, within RR42_RS16225at 3513.035 kb on + strand, within RR42_RS16225at 3513.035 kb on + strand, within RR42_RS16225at 3513.176 kb on + strand, within RR42_RS16225at 3513.587 kb on + strandat 3513.636 kb on + strandat 3513.636 kb on + strandat 3513.667 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,512,762 - RR42_RS16225 0.47 +1.4
3,512,912 - RR42_RS16225 0.56 +1.7
3,512,927 + RR42_RS16225 0.57 +1.8
3,512,927 + RR42_RS16225 0.57 +3.1
3,512,927 + RR42_RS16225 0.57 +1.8
3,512,927 + RR42_RS16225 0.57 +0.6
3,512,927 + RR42_RS16225 0.57 +1.3
3,513,035 + RR42_RS16225 0.64 +0.4
3,513,035 + RR42_RS16225 0.64 -2.0
3,513,176 + RR42_RS16225 0.73 +1.7
3,513,587 + +1.3
3,513,636 + +0.5
3,513,636 + +1.1
3,513,667 + -0.7

Or see this region's nucleotide sequence