Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS15545 and RR42_RS15550 are separated by 7 nucleotides RR42_RS15550 and RR42_RS15555 are separated by 60 nucleotides RR42_RS15555 and RR42_RS15560 are separated by 84 nucleotides RR42_RS15560 and RR42_RS15565 are separated by 258 nucleotides
RR42_RS15545: RR42_RS15545 - pilus assembly protein PilE, at 3,358,412 to 3,358,861
_RS15545
RR42_RS15550: RR42_RS15550 - pilus assembly protein, at 3,358,869 to 3,359,441
_RS15550
RR42_RS15555: RR42_RS15555 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 3,359,502 to 3,360,620
_RS15555
RR42_RS15560: RR42_RS15560 - riboflavin synthase subunit alpha, at 3,360,705 to 3,361,334
_RS15560
RR42_RS15565: RR42_RS15565 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 3,361,593 to 3,362,705
_RS15565
Position (kb)
3359
3360
3361 Strain fitness (log2 ratio)
-2
-1
0
1 at 3358.519 kb on + strand, within RR42_RS15545 at 3358.520 kb on - strand, within RR42_RS15545 at 3358.520 kb on - strand, within RR42_RS15545 at 3358.520 kb on - strand, within RR42_RS15545 at 3358.520 kb on - strand, within RR42_RS15545 at 3359.093 kb on - strand, within RR42_RS15550 at 3359.255 kb on + strand, within RR42_RS15550 at 3359.255 kb on + strand, within RR42_RS15550 at 3359.255 kb on + strand, within RR42_RS15550 at 3359.256 kb on - strand, within RR42_RS15550 at 3359.256 kb on - strand, within RR42_RS15550 at 3359.256 kb on - strand, within RR42_RS15550 at 3359.455 kb on + strand at 3359.455 kb on + strand at 3359.455 kb on + strand at 3359.455 kb on + strand at 3360.668 kb on + strand at 3360.668 kb on + strand at 3360.669 kb on - strand at 3361.460 kb on + strand at 3361.465 kb on + strand at 3361.465 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,358,519 + RR42_RS15545 0.24 -0.5 3,358,520 - RR42_RS15545 0.24 -1.6 3,358,520 - RR42_RS15545 0.24 +0.0 3,358,520 - RR42_RS15545 0.24 -2.0 3,358,520 - RR42_RS15545 0.24 +0.3 3,359,093 - RR42_RS15550 0.39 -1.7 3,359,255 + RR42_RS15550 0.67 +0.0 3,359,255 + RR42_RS15550 0.67 +0.1 3,359,255 + RR42_RS15550 0.67 +1.6 3,359,256 - RR42_RS15550 0.68 +0.6 3,359,256 - RR42_RS15550 0.68 +0.4 3,359,256 - RR42_RS15550 0.68 -0.9 3,359,455 + -1.8 3,359,455 + +0.3 3,359,455 + -1.8 3,359,455 + +0.3 3,360,668 + -0.5 3,360,668 + -1.6 3,360,669 - +0.7 3,361,460 + +1.0 3,361,465 + -0.4 3,361,465 + +0.7
Or see this region's nucleotide sequence