Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15150

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS15145 and RR42_RS15150 are separated by 289 nucleotidesRR42_RS15150 and RR42_RS15155 are separated by 344 nucleotides RR42_RS15145: RR42_RS15145 - membrane protein, at 3,277,300 to 3,278,061 _RS15145 RR42_RS15150: RR42_RS15150 - alanyl-tRNA synthetase, at 3,278,351 to 3,280,975 _RS15150 RR42_RS15155: RR42_RS15155 - CoA-transferase, at 3,281,320 to 3,282,540 _RS15155 Position (kb) 3278 3279 3280 3281Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3277.565 kb on - strand, within RR42_RS15145at 3277.565 kb on - strand, within RR42_RS15145at 3277.746 kb on + strand, within RR42_RS15145at 3277.747 kb on - strand, within RR42_RS15145at 3277.951 kb on + strand, within RR42_RS15145at 3278.093 kb on - strandat 3281.177 kb on - strandat 3281.177 kb on - strandat 3281.330 kb on + strandat 3281.512 kb on + strand, within RR42_RS15155at 3281.512 kb on + strand, within RR42_RS15155at 3281.512 kb on + strand, within RR42_RS15155at 3281.512 kb on + strand, within RR42_RS15155at 3281.512 kb on + strand, within RR42_RS15155at 3281.512 kb on + strand, within RR42_RS15155at 3281.515 kb on + strand, within RR42_RS15155at 3281.516 kb on - strand, within RR42_RS15155at 3281.516 kb on - strand, within RR42_RS15155at 3281.626 kb on + strand, within RR42_RS15155at 3281.626 kb on + strand, within RR42_RS15155at 3281.627 kb on - strand, within RR42_RS15155at 3281.627 kb on - strand, within RR42_RS15155at 3281.627 kb on - strand, within RR42_RS15155at 3281.627 kb on - strand, within RR42_RS15155at 3281.627 kb on - strand, within RR42_RS15155at 3281.650 kb on + strand, within RR42_RS15155at 3281.651 kb on - strand, within RR42_RS15155at 3281.662 kb on + strand, within RR42_RS15155at 3281.698 kb on + strand, within RR42_RS15155at 3281.698 kb on + strand, within RR42_RS15155at 3281.698 kb on + strand, within RR42_RS15155at 3281.699 kb on - strand, within RR42_RS15155at 3281.699 kb on - strand, within RR42_RS15155at 3281.699 kb on - strand, within RR42_RS15155at 3281.873 kb on - strand, within RR42_RS15155at 3281.932 kb on + strand, within RR42_RS15155at 3281.933 kb on - strand, within RR42_RS15155

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,277,565 - RR42_RS15145 0.35 +1.4
3,277,565 - RR42_RS15145 0.35 -0.4
3,277,746 + RR42_RS15145 0.59 +0.2
3,277,747 - RR42_RS15145 0.59 -1.6
3,277,951 + RR42_RS15145 0.85 +2.2
3,278,093 - -0.0
3,281,177 - -1.7
3,281,177 - +2.1
3,281,330 + +0.8
3,281,512 + RR42_RS15155 0.16 +0.7
3,281,512 + RR42_RS15155 0.16 -1.4
3,281,512 + RR42_RS15155 0.16 -1.1
3,281,512 + RR42_RS15155 0.16 -1.0
3,281,512 + RR42_RS15155 0.16 +1.4
3,281,512 + RR42_RS15155 0.16 +1.0
3,281,515 + RR42_RS15155 0.16 +0.5
3,281,516 - RR42_RS15155 0.16 -0.9
3,281,516 - RR42_RS15155 0.16 +0.6
3,281,626 + RR42_RS15155 0.25 +0.2
3,281,626 + RR42_RS15155 0.25 -0.1
3,281,627 - RR42_RS15155 0.25 -4.0
3,281,627 - RR42_RS15155 0.25 -1.2
3,281,627 - RR42_RS15155 0.25 +1.4
3,281,627 - RR42_RS15155 0.25 -0.3
3,281,627 - RR42_RS15155 0.25 -2.0
3,281,650 + RR42_RS15155 0.27 +0.1
3,281,651 - RR42_RS15155 0.27 -2.3
3,281,662 + RR42_RS15155 0.28 +0.6
3,281,698 + RR42_RS15155 0.31 +3.2
3,281,698 + RR42_RS15155 0.31 -0.0
3,281,698 + RR42_RS15155 0.31 +1.6
3,281,699 - RR42_RS15155 0.31 +1.5
3,281,699 - RR42_RS15155 0.31 -1.0
3,281,699 - RR42_RS15155 0.31 -3.3
3,281,873 - RR42_RS15155 0.45 -1.4
3,281,932 + RR42_RS15155 0.50 +0.3
3,281,933 - RR42_RS15155 0.50 -0.4

Or see this region's nucleotide sequence