Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14825

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14815 and RR42_RS14820 are separated by 63 nucleotidesRR42_RS14820 and RR42_RS14825 are separated by 65 nucleotidesRR42_RS14825 and RR42_RS14830 are separated by 207 nucleotides RR42_RS14815: RR42_RS14815 - hypothetical protein, at 3,192,261 to 3,192,947 _RS14815 RR42_RS14820: RR42_RS14820 - hypothetical protein, at 3,193,011 to 3,193,670 _RS14820 RR42_RS14825: RR42_RS14825 - membrane protein, at 3,193,736 to 3,195,541 _RS14825 RR42_RS14830: RR42_RS14830 - ABC transporter substrate-binding protein, at 3,195,749 to 3,196,747 _RS14830 Position (kb) 3193 3194 3195 3196Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3193.024 kb on + strandat 3193.024 kb on + strandat 3193.024 kb on + strandat 3193.069 kb on + strandat 3193.069 kb on + strandat 3193.410 kb on + strand, within RR42_RS14820at 3193.410 kb on + strand, within RR42_RS14820at 3193.411 kb on - strand, within RR42_RS14820at 3193.546 kb on - strand, within RR42_RS14820at 3193.633 kb on - strandat 3193.669 kb on - strandat 3193.669 kb on - strandat 3193.723 kb on + strandat 3193.724 kb on - strandat 3194.045 kb on - strand, within RR42_RS14825at 3195.798 kb on + strandat 3195.841 kb on - strandat 3195.841 kb on - strandat 3196.170 kb on + strand, within RR42_RS14830at 3196.211 kb on + strand, within RR42_RS14830at 3196.261 kb on + strand, within RR42_RS14830at 3196.296 kb on + strand, within RR42_RS14830at 3196.296 kb on + strand, within RR42_RS14830at 3196.297 kb on - strand, within RR42_RS14830at 3196.297 kb on - strand, within RR42_RS14830at 3196.464 kb on + strand, within RR42_RS14830at 3196.465 kb on - strand, within RR42_RS14830

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,193,024 + -1.4
3,193,024 + +0.6
3,193,024 + -4.9
3,193,069 + +2.3
3,193,069 + -0.3
3,193,410 + RR42_RS14820 0.60 -0.4
3,193,410 + RR42_RS14820 0.60 +0.6
3,193,411 - RR42_RS14820 0.61 +1.3
3,193,546 - RR42_RS14820 0.81 +2.0
3,193,633 - -2.9
3,193,669 - +0.0
3,193,669 - +3.2
3,193,723 + +0.2
3,193,724 - +1.6
3,194,045 - RR42_RS14825 0.17 -0.6
3,195,798 + -3.8
3,195,841 - -2.1
3,195,841 - -3.1
3,196,170 + RR42_RS14830 0.42 +0.1
3,196,211 + RR42_RS14830 0.46 +1.4
3,196,261 + RR42_RS14830 0.51 +0.5
3,196,296 + RR42_RS14830 0.55 -2.1
3,196,296 + RR42_RS14830 0.55 +1.1
3,196,297 - RR42_RS14830 0.55 +1.6
3,196,297 - RR42_RS14830 0.55 +1.0
3,196,464 + RR42_RS14830 0.72 +0.9
3,196,465 - RR42_RS14830 0.72 +1.3

Or see this region's nucleotide sequence