Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14815 and RR42_RS14820 are separated by 63 nucleotides RR42_RS14820 and RR42_RS14825 are separated by 65 nucleotides RR42_RS14825 and RR42_RS14830 are separated by 207 nucleotides
RR42_RS14815: RR42_RS14815 - hypothetical protein, at 3,192,261 to 3,192,947
_RS14815
RR42_RS14820: RR42_RS14820 - hypothetical protein, at 3,193,011 to 3,193,670
_RS14820
RR42_RS14825: RR42_RS14825 - membrane protein, at 3,193,736 to 3,195,541
_RS14825
RR42_RS14830: RR42_RS14830 - ABC transporter substrate-binding protein, at 3,195,749 to 3,196,747
_RS14830
Position (kb)
3193
3194
3195
3196 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 3193.024 kb on + strand at 3193.024 kb on + strand at 3193.024 kb on + strand at 3193.069 kb on + strand at 3193.069 kb on + strand at 3193.410 kb on + strand, within RR42_RS14820 at 3193.410 kb on + strand, within RR42_RS14820 at 3193.411 kb on - strand, within RR42_RS14820 at 3193.546 kb on - strand, within RR42_RS14820 at 3193.633 kb on - strand at 3193.669 kb on - strand at 3193.669 kb on - strand at 3193.723 kb on + strand at 3193.724 kb on - strand at 3194.045 kb on - strand, within RR42_RS14825 at 3195.798 kb on + strand at 3195.841 kb on - strand at 3195.841 kb on - strand at 3196.170 kb on + strand, within RR42_RS14830 at 3196.211 kb on + strand, within RR42_RS14830 at 3196.261 kb on + strand, within RR42_RS14830 at 3196.296 kb on + strand, within RR42_RS14830 at 3196.296 kb on + strand, within RR42_RS14830 at 3196.297 kb on - strand, within RR42_RS14830 at 3196.297 kb on - strand, within RR42_RS14830 at 3196.464 kb on + strand, within RR42_RS14830 at 3196.465 kb on - strand, within RR42_RS14830
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,193,024 + -1.4 3,193,024 + +0.6 3,193,024 + -4.9 3,193,069 + +2.3 3,193,069 + -0.3 3,193,410 + RR42_RS14820 0.60 -0.4 3,193,410 + RR42_RS14820 0.60 +0.6 3,193,411 - RR42_RS14820 0.61 +1.3 3,193,546 - RR42_RS14820 0.81 +2.0 3,193,633 - -2.9 3,193,669 - +0.0 3,193,669 - +3.2 3,193,723 + +0.2 3,193,724 - +1.6 3,194,045 - RR42_RS14825 0.17 -0.6 3,195,798 + -3.8 3,195,841 - -2.1 3,195,841 - -3.1 3,196,170 + RR42_RS14830 0.42 +0.1 3,196,211 + RR42_RS14830 0.46 +1.4 3,196,261 + RR42_RS14830 0.51 +0.5 3,196,296 + RR42_RS14830 0.55 -2.1 3,196,296 + RR42_RS14830 0.55 +1.1 3,196,297 - RR42_RS14830 0.55 +1.6 3,196,297 - RR42_RS14830 0.55 +1.0 3,196,464 + RR42_RS14830 0.72 +0.9 3,196,465 - RR42_RS14830 0.72 +1.3
Or see this region's nucleotide sequence