Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14485

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,113,608	+				+1.2
3,113,608	+				-0.1
3,113,656	+				+1.8
3,113,656	+				+1.5
3,113,657	-				+1.1
3,113,689	+				+0.5
3,113,690	-				+0.3
3,113,729	+				+0.6
3,113,729	+				-3.0
3,113,729	+				+1.0
3,113,730	-				+1.0
3,113,730	-				+0.2
3,113,730	-				+0.1
3,113,733	+				-1.3
3,113,753	-				-2.0
3,113,774	-				-4.1
3,113,780	+				-1.4
3,113,780	+				+0.6
3,113,822	+				+1.0
3,113,822	+				+0.3
3,113,823	-				-2.8
3,113,823	-				+1.6
3,113,891	+				+3.1
3,113,891	+				+0.9
3,113,892	-				-0.9
3,114,051	+		RR42_RS14480	0.37	-2.0
3,114,051	+		RR42_RS14480	0.37	+1.8
3,114,052	-		RR42_RS14480	0.37	+3.3
3,114,052	-		RR42_RS14480	0.37	-3.9
3,114,052	-		RR42_RS14480	0.37	-2.4
3,114,112	-		RR42_RS14480	0.48	-0.3
3,114,387	+				+0.5
3,114,387	+				+1.2
3,114,388	-				+0.8
3,114,388	-				-0.0
3,114,399	+				-1.2
3,114,399	+				+0.9
3,114,399	+				+1.6
3,114,399	+				+1.2
3,114,399	+				+1.6
3,114,399	+				+2.3
3,114,400	-				+1.0
3,114,400	-				-0.5
3,114,400	-				-3.3
3,114,401	+				+1.1
3,114,401	+				+0.9
3,114,409	-				-1.8
3,114,417	+				+0.3
3,114,440	+				-0.9
3,114,440	+				+0.6
3,114,440	+				-0.5
3,114,443	+				+0.7
3,114,502	+				+2.1
3,114,503	-				+0.1
3,114,530	+				+2.1
3,114,582	+				-0.3
3,114,583	-				+0.3
3,114,583	-				-2.5
3,114,583	-				-0.5
3,114,594	+				+2.6
3,114,595	-				-2.2
3,114,679	-		RR42_RS14485	0.11	-2.7
3,114,792	-		RR42_RS14485	0.19	+0.7
3,115,150	-		RR42_RS14485	0.43	+1.6
3,115,290	+		RR42_RS14485	0.53	+2.0
3,115,291	-		RR42_RS14485	0.53	-0.6
3,115,291	-		RR42_RS14485	0.53	+1.0
3,115,291	-		RR42_RS14485	0.53	-0.3
3,115,291	-		RR42_RS14485	0.53	+1.5
3,115,298	-		RR42_RS14485	0.54	+0.6
3,115,298	-		RR42_RS14485	0.54	+0.3
3,115,298	-		RR42_RS14485	0.54	+0.5
3,115,298	-		RR42_RS14485	0.54	+0.3
3,115,298	-		RR42_RS14485	0.54	+1.6
3,115,336	-		RR42_RS14485	0.56	+0.9
3,115,336	-		RR42_RS14485	0.56	+0.1
3,115,344	+		RR42_RS14485	0.57	+0.2
3,115,344	+		RR42_RS14485	0.57	+1.8
3,115,344	+		RR42_RS14485	0.57	-0.4
3,115,344	+		RR42_RS14485	0.57	+2.5
3,115,344	+		RR42_RS14485	0.57	+0.1
3,115,345	-		RR42_RS14485	0.57	+1.1
3,115,345	-		RR42_RS14485	0.57	-4.0
3,115,345	-		RR42_RS14485	0.57	+1.9
3,115,345	-		RR42_RS14485	0.57	-0.7
3,115,345	-		RR42_RS14485	0.57	-2.8
3,115,345	-		RR42_RS14485	0.57	-1.1
3,115,567	-		RR42_RS14485	0.72	+0.9
3,115,567	-		RR42_RS14485	0.72	-0.4
3,115,567	-		RR42_RS14485	0.72	-1.3
3,115,567	-		RR42_RS14485	0.72	+0.6
3,115,567	-		RR42_RS14485	0.72	-0.2
3,115,614	+		RR42_RS14485	0.75	-1.1
3,115,614	+		RR42_RS14485	0.75	+2.5
3,115,614	+		RR42_RS14485	0.75	+2.5
3,115,615	-		RR42_RS14485	0.75	+2.0
3,115,615	-		RR42_RS14485	0.75	-2.4
3,115,627	+		RR42_RS14485	0.76	+1.6
3,115,746	-		RR42_RS14485	0.85	-4.6
3,115,947	+				+2.1
3,115,947	+				-2.6
3,115,948	-				-1.4
3,115,948	-				+1.2
3,115,948	-				-5.1
3,115,959	+				+1.1
3,115,960	-				-1.8
3,115,960	-				-1.5
3,116,065	-				-0.8
3,116,082	+				+0.9
3,116,083	-				-2.5
3,116,083	-				-5.0
3,116,092	+				+0.8
3,116,144	+				+0.5
3,116,218	-				-0.2
3,116,227	-				-4.1
3,116,265	+				-2.9
3,116,265	+				-1.6
3,116,289	+				-4.5
3,116,290	-				-1.5
3,116,290	-				-0.1
3,116,338	+				+0.1
3,116,338	+				-0.5
3,116,366	+				+1.4
3,116,366	+				-1.9
3,116,367	-				-3.5
3,116,367	-				-5.8
3,116,744	-		RR42_RS14490	0.17	-2.6
3,116,744	-		RR42_RS14490	0.17	+1.6
3,116,778	+		RR42_RS14490	0.19	-1.5
3,116,778	+		RR42_RS14490	0.19	-1.8
3,116,778	+		RR42_RS14490	0.19	-1.7
3,116,869	+		RR42_RS14490	0.22	+1.3
3,116,869	+		RR42_RS14490	0.22	-2.0
3,116,870	-		RR42_RS14490	0.22	-1.9