Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13960

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,005,942	+				-1.3
3,005,942	+				-1.4
3,005,943	-				+1.4
3,005,943	-				-2.0
3,005,943	-				-0.1
3,006,015	+				+0.1
3,006,015	+				+0.1
3,006,016	-				+1.4
3,006,085	+				+1.2
3,006,086	-				-0.0
3,006,089	+				-2.9
3,006,089	+				+1.3
3,006,089	+				+0.8
3,006,090	-				-1.7
3,006,090	-				-0.5
3,006,090	-				+0.2
3,006,205	+				-1.5
3,006,239	-		RR42_RS13950	0.11	-0.6
3,006,250	+		RR42_RS13950	0.14	-2.1
3,006,251	-		RR42_RS13950	0.14	-2.4
3,006,251	-		RR42_RS13950	0.14	-2.1
3,006,251	-		RR42_RS13950	0.14	+1.6
3,006,265	+		RR42_RS13950	0.19	-2.3
3,006,266	-		RR42_RS13950	0.19	-3.3
3,006,268	+		RR42_RS13950	0.20	-0.2
3,006,301	+		RR42_RS13950	0.30	+1.6
3,006,301	+		RR42_RS13950	0.30	-2.1
3,006,302	-		RR42_RS13950	0.30	-3.0
3,006,304	+		RR42_RS13950	0.31	+0.2
3,006,305	-		RR42_RS13950	0.31	-1.6
3,006,305	-		RR42_RS13950	0.31	-3.0
3,006,343	+		RR42_RS13950	0.43	-2.5
3,006,343	+		RR42_RS13950	0.43	-1.7
3,006,344	-		RR42_RS13950	0.43	+0.3
3,006,344	-		RR42_RS13950	0.43	-0.3
3,006,346	+		RR42_RS13950	0.43	-1.3
3,006,347	-		RR42_RS13950	0.44	+0.9
3,006,347	-		RR42_RS13950	0.44	-3.7
3,006,386	+		RR42_RS13950	0.56	+1.1
3,006,386	+		RR42_RS13950	0.56	+1.5
3,006,386	+		RR42_RS13950	0.56	-0.1
3,006,386	+		RR42_RS13950	0.56	+0.6
3,006,386	+		RR42_RS13950	0.56	-0.2
3,006,387	-		RR42_RS13950	0.56	+0.9
3,006,387	-		RR42_RS13950	0.56	+0.4
3,006,387	-		RR42_RS13950	0.56	-3.1
3,006,387	-		RR42_RS13950	0.56	-0.1
3,006,387	-		RR42_RS13950	0.56	-0.9
3,006,388	+		RR42_RS13950	0.56	+1.4
3,006,389	-		RR42_RS13950	0.57	+0.3
3,006,389	-		RR42_RS13950	0.57	-2.6
3,006,389	-		RR42_RS13950	0.57	+0.5
3,006,389	-		RR42_RS13950	0.57	+1.0
3,006,406	+		RR42_RS13950	0.62	+0.6
3,006,406	+		RR42_RS13950	0.62	-2.9
3,006,406	+		RR42_RS13950	0.62	-2.2
3,006,537	-				+0.8
3,006,537	-				-2.5
3,006,537	-				+0.2
3,006,537	-				-0.2
3,006,554	+				+0.3
3,006,568	+				+1.0
3,006,568	+				-1.1
3,006,569	-				-3.2
3,006,573	+				-1.0
3,006,573	+				+3.1
3,006,574	-				+1.8
3,006,574	-				-0.3
3,006,610	+				-0.2
3,006,610	+				+0.0
3,006,611	-				+1.8
3,006,618	+				-1.5
3,006,641	+				+0.6
3,006,641	+				+0.6
3,006,641	+				+0.7
3,006,641	+				+1.2
3,006,641	+				+1.6
3,006,641	+				+1.7
3,006,641	+				-0.4
3,006,641	+				+1.0
3,006,641	+				+1.0
3,006,641	+				+0.3
3,006,642	-				+0.4
3,006,642	-				-0.5
3,006,673	-				-3.8
3,006,820	+				-4.3
3,006,820	+				+2.8
3,006,820	+				-3.8
3,006,821	-				+0.0
3,006,821	-				-2.1
3,006,821	-				-5.1
3,007,015	+		RR42_RS13960	0.14	+0.8
3,007,338	+		RR42_RS13960	0.43	-1.5
3,007,338	+		RR42_RS13960	0.43	+1.0
3,007,401	+		RR42_RS13960	0.49	-2.8
3,007,407	+		RR42_RS13960	0.49	-0.5
3,007,407	+		RR42_RS13960	0.49	+0.8
3,007,408	-		RR42_RS13960	0.49	-2.3
3,007,408	-		RR42_RS13960	0.49	+0.5
3,007,408	-		RR42_RS13960	0.49	-4.5
3,007,436	+		RR42_RS13960	0.52	-4.4
3,007,436	+		RR42_RS13960	0.52	+3.2
3,007,436	+		RR42_RS13960	0.52	-3.3
3,007,437	-		RR42_RS13960	0.52	+0.1
3,007,520	+		RR42_RS13960	0.60	+0.5
3,007,520	+		RR42_RS13960	0.60	+2.3
3,007,521	-		RR42_RS13960	0.60	+0.9
3,007,521	-		RR42_RS13960	0.60	-4.7
3,007,563	-		RR42_RS13960	0.63	-1.9
3,007,687	-		RR42_RS13960	0.75	-3.3
3,007,687	-		RR42_RS13960	0.75	+1.0
3,007,687	-		RR42_RS13960	0.75	-1.2
3,007,687	-		RR42_RS13960	0.75	+2.5
3,007,771	+		RR42_RS13960	0.82	-4.0
3,007,771	+		RR42_RS13960	0.82	-1.2
3,007,771	+		RR42_RS13960	0.82	-3.2
3,007,771	+		RR42_RS13960	0.82	+0.7
3,007,771	+		RR42_RS13960	0.82	+1.3
3,008,009	+				+0.2
3,008,009	+				-4.0
3,008,010	-				-2.8
3,008,010	-				+0.9
3,008,016	+				+0.6
3,008,029	+				-2.1
3,008,029	+				-1.5
3,008,029	+				+2.2
3,008,030	-				+1.6
3,008,030	-				+0.2
3,008,033	+				-0.2
3,008,033	+				+0.3
3,008,033	+				-0.2
3,008,033	+				-5.0
3,008,033	+				+1.7
3,008,033	+				+2.0
3,008,033	+				+1.4
3,008,033	+				+1.1
3,008,033	+				-0.1
3,008,034	-				-1.7
3,008,034	-				-2.5
3,008,034	-				+0.2
3,008,034	-				+1.4
3,008,034	-				-3.1
3,008,034	-				-0.4
3,008,034	-				-1.3
3,008,034	-				-3.0
3,008,043	-				-0.8
3,008,070	+				+0.3
3,008,399	+		RR42_RS13965	0.34	+0.7
3,008,409	+		RR42_RS13965	0.35	+1.0
3,008,409	+		RR42_RS13965	0.35	-2.1
3,008,409	+		RR42_RS13965	0.35	+1.7
3,008,409	+		RR42_RS13965	0.35	-1.0
3,008,409	+		RR42_RS13965	0.35	-1.7
3,008,409	+		RR42_RS13965	0.35	+0.2
3,008,409	+		RR42_RS13965	0.35	-2.7
3,008,409	+		RR42_RS13965	0.35	+1.2
3,008,411	+		RR42_RS13965	0.35	+0.5
3,008,411	+		RR42_RS13965	0.35	+1.4
3,008,411	+		RR42_RS13965	0.35	-0.2
3,008,634	+		RR42_RS13965	0.60	-1.9
3,008,929	-				+1.8
3,008,929	-				+0.6
3,008,929	-				-3.2
3,008,934	-				-1.0
3,008,934	-				-0.1
3,008,934	-				-2.1
3,008,962	-				-0.1