Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13440

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,899,189	+		RR42_RS13435	0.62	-2.0
2,899,190	-		RR42_RS13435	0.62	-4.0
2,899,190	-		RR42_RS13435	0.62	-2.9
2,899,190	-		RR42_RS13435	0.62	-3.9
2,899,309	+		RR42_RS13435	0.67	-2.6
2,899,309	+		RR42_RS13435	0.67	-4.0
2,899,310	-		RR42_RS13435	0.67	-1.1
2,899,334	-		RR42_RS13435	0.69	-1.8
2,899,579	+		RR42_RS13435	0.80	-3.3
2,899,580	-		RR42_RS13435	0.80	-3.4
2,899,580	-		RR42_RS13435	0.80	-3.5
2,899,580	-		RR42_RS13435	0.80	-2.6
2,899,580	-		RR42_RS13435	0.80	-2.2
2,899,718	-		RR42_RS13435	0.87	-3.5
2,899,720	+		RR42_RS13435	0.87	-4.4
2,899,721	-		RR42_RS13435	0.87	-3.7
2,899,750	+		RR42_RS13435	0.88	-4.3
2,899,826	+				-1.7
2,899,912	+				-3.9
2,899,913	-				-3.2
2,900,105	+				-2.6
2,900,111	+				-0.6
2,900,111	+				-0.6
2,900,111	+				-1.1
2,900,111	+				+0.9
2,900,111	+				+0.2
2,900,112	-				+1.1
2,900,112	-				+0.7
2,900,113	+				-1.6
2,900,300	+		RR42_RS13440	0.18	+2.6
2,900,400	-		RR42_RS13440	0.25	-3.0
2,900,402	-		RR42_RS13440	0.25	-3.0
2,900,672	-		RR42_RS13440	0.45	-1.7
2,900,941	+		RR42_RS13440	0.65	-0.6
2,900,941	+		RR42_RS13440	0.65	+2.9
2,900,941	+		RR42_RS13440	0.65	-0.1
2,900,942	-		RR42_RS13440	0.66	+1.0
2,900,942	-		RR42_RS13440	0.66	+0.7
2,901,105	-		RR42_RS13440	0.78	-1.5
2,901,113	+		RR42_RS13440	0.78	+1.6
2,901,114	-		RR42_RS13440	0.78	+0.2
2,901,114	-		RR42_RS13440	0.78	-0.9
2,901,114	-		RR42_RS13440	0.78	+1.4
2,901,176	-		RR42_RS13440	0.83	-1.5
2,901,178	+		RR42_RS13440	0.83	-2.4
2,901,178	+		RR42_RS13440	0.83	-5.4
2,901,179	-		RR42_RS13440	0.83	+1.5
2,901,179	-		RR42_RS13440	0.83	+1.6
2,901,179	-		RR42_RS13440	0.83	-1.3
2,901,221	-		RR42_RS13440	0.86	-1.0
2,901,262	+		RR42_RS13440	0.89	+0.2
2,901,263	-		RR42_RS13440	0.89	-2.7
2,901,268	+		RR42_RS13440	0.90	+0.6
2,901,269	-		RR42_RS13440	0.90	+1.6
2,901,269	-		RR42_RS13440	0.90	+1.2
2,901,271	+				-3.3
2,901,337	+				-3.2
2,901,337	+				+1.1
2,901,337	+				-0.5
2,901,337	+				+2.7
2,901,338	-				+0.1
2,901,338	-				-1.1
2,901,480	+				-0.1
2,901,480	+				+1.6
2,901,481	-				+0.5
2,901,586	-				+0.7
2,901,586	-				+0.0
2,901,622	+		RR42_RS13445	0.14	-0.9
2,901,622	+		RR42_RS13445	0.14	-1.2
2,901,622	+		RR42_RS13445	0.14	+1.7
2,901,622	+		RR42_RS13445	0.14	-0.4
2,901,622	+		RR42_RS13445	0.14	-1.2
2,901,623	-		RR42_RS13445	0.14	-2.1
2,901,623	-		RR42_RS13445	0.14	+1.7
2,901,849	-		RR42_RS13445	0.46	-0.2
2,901,925	-		RR42_RS13445	0.57	-1.3
2,901,925	-		RR42_RS13445	0.57	-1.4
2,901,925	-		RR42_RS13445	0.57	-1.1
2,901,925	-		RR42_RS13445	0.57	-1.8
2,902,131	+		RR42_RS13445	0.86	-2.7
2,902,254	-				-0.3
2,902,254	-				-4.2
2,902,319	+				+0.5
2,902,319	+				-0.1
2,902,319	+				+0.8
2,902,320	-				+0.1
2,902,320	-				+1.0